RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 NPIPB11E5RHQ5 1161 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 F8W8V4 182 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 TSPAN6O43657 245 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 AP1G1O43747 822 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 SERPINI2O75830 405 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 PIAS2O75928 621 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 WDR47O94967 919 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 NFATC1O95644 943 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 ZBED1O96006 694 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 EGFP01133 1207 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 HRGP04196 525 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 MYBP10242 640 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 KITP10721 976 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 SLC5A1P13866 664 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 ARSAP15289 507 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 NAGAP17050 411 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 HSPA6P17066 643 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 VCAM1P19320 739 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 MMP8P22894 467 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 RBL1P28749 1068 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 SLC16A2P36021 539 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 PTDSS1P48651 473 aaKnown RBP0.58□□□□□ -2.32
VPS35-212ENST00000640313 AGTR2P50052 363 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 PEX5P50542 639 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 ZNF132P52740 706 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 IRX1P78414 480 aaPredicted RBP0.58□□□□□ -2.32
VPS35-212ENST00000640313 PMPCAQ10713 525 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 SLC13A2Q13183 592 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 MYBPHQ13203 477 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 RAB32Q13637 225 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 ARHGEF7Q14155 803 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 FGL2Q14314 439 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 GRM3Q14832 879 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 CNN3Q15417 329 aaKnown RBP0.58□□□□□ -2.32
VPS35-212ENST00000640313 CLEC9AQ6UXN8 241 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 MAEAQ7L5Y9 396 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 CHST15Q7LFX5 561 aaPredicted RBP0.58□□□□□ -2.32
VPS35-212ENST00000640313 SESTD1Q86VW0 696 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 P3H2Q8IVL5 708 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 GRAMD1CQ8IYS0 662 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 FAM185AQ8N0U4 392 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 SLC25A41Q8N5S1 370 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 RNF152Q8N8N0 203 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 OR52L2PQ8NGH6 319 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 OR6B3Q8NGW1 331 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 ZCRB1Q8TBF4 217 aaKnown RBP0.58□□□□□ -2.32
VPS35-212ENST00000640313 TMEM163Q8TC26 289 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 SECTM1Q8WVN6 248 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 KAT2AQ92830 837 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 NMD3Q96D46 503 aaKnown RBP0.58□□□□□ -2.32
VPS35-212ENST00000640313 MSLNLQ96KJ4 702 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 APOLD1Q96LR9 279 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 C17orf77Q96MU5 243 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 ZNF385AQ96PM9 386 aaKnown RBP0.58□□□□□ -2.32
VPS35-212ENST00000640313 ZNF518BQ9C0D4 1074 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 B3GNT4Q9C0J1 378 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 WDR13Q9H1Z4 485 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 ARMT1Q9H993 441 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 EBF2Q9HAK2 575 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 FBRSL1Q9HCM7 1045 aaKnown RBP0.58□□□□□ -2.32
VPS35-212ENST00000640313 AASDHPPTQ9NRN7 309 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 ZIM2Q9NZV7 527 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 KLHL42Q9P2K6 505 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 DKK4Q9UBT3 224 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 MALT1Q9UDY8 824 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 ZNF180Q9UJW8 692 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 CAPN11Q9UMQ6 739 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 VPS4AQ9UN37 437 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 L1RE1Q9UN81 338 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 SLC8A2Q9UPR5 921 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 SLC45A1Q9Y2W3 748 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 EID1Q9Y6B2 187 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 ZNF646O15015 1829 aaPredicted RBP0.58□□□□□ -2.32
VPS35-212ENST00000640313 COL16A1Q07092 1604 aaPredicted RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 IGKV6D-21A0A0A0MT36 114 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 A0A1W2PPL8 197 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 GXYLT2A0PJZ3 443 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 OR2W5A6NFC9 320 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 CAPN8A6NHC0 703 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 SAC3D1A6NKF1 404 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 CLCA1A8K7I4 914 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 ISM1B1AKI9 464 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 STMND1H3BQB6 276 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 H7C4K7 107 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 LDB2O43679 373 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 PPP6R2O75170 966 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 ATP1A1P05023 1023 aaKnown RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 WEE2P0C1S8 567 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 ARP10275 920 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 TXNP10599 105 aaKnown RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 MYF5P13349 255 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 TSHRP16473 764 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 RXRAP19793 462 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 NR1D1P20393 614 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 TGM2P21980 687 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 CCND1P24385 295 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 ACVR2AP27037 513 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 MARK3P27448 753 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 NTSR1P30989 418 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 SLC8A1P32418 973 aa0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms