RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CYP20A1Q6UW02 462 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 ATAD1Q8NBU5 361 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 LINC00301Q8NCQ3 95 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 NDC1Q9BTX1 674 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 ZYG11BQ9C0D3 744 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 EPB41L5Q9HCM4 733 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 FBRSL1Q9HCM7 1045 aaKnown RBP5.12□□□□□ -1.59
SCN1A-218ENST00000640036 UVRAGQ9P2Y5 699 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 FBXL5Q9UKA1 691 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 ANO9A1A5B4 782 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 RHOXF2BP0C7M4 288 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 RPL17P18621 184 aaKnown RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 SLC9A1P19634 815 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 UGT1A1P22309 533 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 MATKP42679 507 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 ZNF200P98182 395 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 SMAD4Q13485 552 aaKnown RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 SF3B4Q15427 424 aaKnown RBP eCLIP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 SF1Q15637 639 aaKnown RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 MLIPQ5VWP3 458 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 CCNYL1Q8N7R7 359 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 POMGNT2Q8NAT1 580 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 TPCN2Q8NHX9 752 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 RHOXF2Q9BQY4 288 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 WNT8AQ9H1J5 351 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 NXF3Q9H4D5 531 aaKnown RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 EPB41L4AQ9HCS5 686 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 FANCLQ9NW38 375 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 COPS7AQ9UBW8 275 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 TSPAN16Q9UKR8 245 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 HEBP2Q9Y5Z4 205 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 MYH6P13533 1939 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 MGAT4DA6NG13 374 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 CAPN8A6NHC0 703 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 PPP1R3GB7ZBB8 358 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 PGRMC1O00264 195 aaKnown RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 FGF10O15520 208 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 CLDN11O75508 207 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 PCCBP05166 539 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 DHX9Q08211 1270 aaKnown RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 ILF2Q12905 390 aaKnown RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 ART3Q13508 389 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 DHX34Q14147 1143 aaKnown RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 SHHQ15465 462 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 GLT6D1Q7Z4J2 308 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 FAM131BQ86XD5 332 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 WDR75Q8IWA0 830 aaKnown RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 BRSK2Q8IWQ3 736 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 TOP6BLQ8N6T0 577 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 CATSPER1Q8NEC5 780 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 AUTS2Q8WXX7 1259 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 REPS1Q96D71 796 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 ULBP1Q9BZM6 244 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 POPDC2Q9HBU9 364 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 C19orf25Q9UFG5 118 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 CYP8B1Q9UNU6 501 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 DRG1Q9Y295 367 aaKnown RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 PRR23D1E9PI22 279 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 C1RP00736 705 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 PRR23D2P0DMB1 279 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 PCNAP12004 261 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 ARF4P18085 180 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 TYK2P29597 1187 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 SELENOVP59797 346 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 POU4F1Q01851 419 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 ELOCQ15369 112 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 PAGE2BQ5JRK9 111 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 DUS1LQ6P1R4 473 aaKnown RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 PLEKHM3Q6ZWE6 761 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 NLRP9Q7RTR0 991 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 DHX40Q8IX18 779 aaKnown RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 DDIASQ8IXT1 998 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 OR10Q1Q8NGQ4 319 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 OXER1Q8TDS5 423 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 SMARCD2Q92925 531 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 MOCOSQ96EN8 888 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 HEMGNQ9BXL5 484 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 BRINP2Q9C0B6 783 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 NEK6Q9HC98 313 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 AGPAT3Q9NRZ7 376 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 NUDT5Q9UKK9 219 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 PHF24Q9UPV7 400 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 GVINP1Q7Z2Y8 2422 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 TCRBV21S2A2A0A5A6 115 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 H3BMM5 538 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 PIK3CDO00329 1044 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 HSPA4LO95757 839 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 FXR1P51114 621 aaKnown RBP eCLIP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 MTF1Q14872 753 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 LYPLAL1Q5VWZ2 237 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 STK40Q8N2I9 435 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 CPA5Q8WXQ8 436 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 EDAQ92838 391 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 SLC5A5Q92911 643 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 OTUB2Q96DC9 234 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 PHF7Q9BWX1 381 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-218ENST00000640036 PACSIN1Q9BY11 444 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 DPH5Q9H2P9 285 aa5.11□□□□□ -1.59
SCN1A-218ENST00000640036 MAN1B1Q9UKM7 699 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms