RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 EPB41L4BQ9H329 900 aa20.58■□□□□ 0.89
CLN3-250ENST00000636839 PRO3102Q9H379 93 aa20.58■□□□□ 0.89
CLN3-250ENST00000636839 IPO11Q9UI26 975 aaKnown RBP20.58■□□□□ 0.89
CLN3-250ENST00000636839 SH3BP1Q9Y3L3 701 aa20.58■□□□□ 0.89
CLN3-250ENST00000636839 UNC80Q8N2C7 3258 aa20.58■□□□□ 0.89
CLN3-250ENST00000636839 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.58■□□□□ 0.88
CLN3-250ENST00000636839 AVILO75366 819 aa20.58■□□□□ 0.88
CLN3-250ENST00000636839 MSS51Q4VC12 460 aa20.58■□□□□ 0.88
CLN3-250ENST00000636839 HTR3DQ70Z44 454 aa20.58■□□□□ 0.88
CLN3-250ENST00000636839 ZCCHC9Q8N567 271 aaKnown RBP20.58■□□□□ 0.88
CLN3-250ENST00000636839 TSGA13Q96PP4 275 aa20.58■□□□□ 0.88
CLN3-250ENST00000636839 GORASP1Q9BQQ3 440 aa20.58■□□□□ 0.88
CLN3-250ENST00000636839 KLHL8Q9P2G9 620 aaPredicted RBP20.58■□□□□ 0.88
CLN3-250ENST00000636839 DPP7Q9UHL4 492 aa20.58■□□□□ 0.88
CLN3-250ENST00000636839 ARHGAP26Q9UNA1 814 aa20.58■□□□□ 0.88
CLN3-250ENST00000636839 MRPS23Q9Y3D9 190 aaKnown RBP20.58■□□□□ 0.88
CLN3-250ENST00000636839 RAMP2O60895 175 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 APRTP07741 180 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 CCNCP24863 283 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 PSMB4P28070 264 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 GRIA1P42261 906 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 NDST2P52849 883 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 CAV1Q03135 178 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 MTA1Q13330 715 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 FASTKD3Q14CZ7 662 aaKnown RBP20.57■□□□□ 0.88
CLN3-250ENST00000636839 POLD3Q15054 466 aaPredicted RBP20.57■□□□□ 0.88
CLN3-250ENST00000636839 RABGAP1LQ5R372 815 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 ZNF354CQ86Y25 554 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 MREGQ8N565 214 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 OR7D4Q8NG98 312 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 UBLCP1Q8WVY7 318 aaPredicted RBP20.57■□□□□ 0.88
CLN3-250ENST00000636839 ZNF576Q9H609 170 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 LRRC4CQ9HCJ2 640 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 PLK2Q9NYY3 685 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 ACTL7AQ9Y615 435 aa20.57■□□□□ 0.88
CLN3-250ENST00000636839 GFRA2O00451 464 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 TBL1XO60907 577 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 FGF19O95750 216 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 PEX11BO96011 259 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 CCNB1P14635 433 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 PMS2P54278 862 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 FAM193AP78312 1265 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 OLIG2Q13516 323 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 TEX44Q53QW1 395 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 ARHGAP15Q53QZ3 475 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 FSCBQ5H9T9 825 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 ACBD5Q5T8D3 534 aaPredicted RBP20.56■□□□□ 0.88
CLN3-250ENST00000636839 TPGS1Q6ZTW0 290 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 OTOP3Q7RTS5 596 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 OR2W6PQ8NHA6 318 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 UHMK1Q8TAS1 419 aaKnown RBP20.56■□□□□ 0.88
CLN3-250ENST00000636839 RBM15Q96T37 977 aaKnown RBP eCLIP20.56■□□□□ 0.88
CLN3-250ENST00000636839 BRD8Q9H0E9 1235 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 SHOC2Q9UQ13 582 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 CLUHO75153 1309 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 GLDCP23378 1020 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 CDH4P55283 916 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 ARID3BQ8IVW6 561 aaPredicted RBP20.56■□□□□ 0.88
CLN3-250ENST00000636839 WFDC5Q8TCV5 224 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 TMA16Q96EY4 203 aaKnown RBP20.56■□□□□ 0.88
CLN3-250ENST00000636839 LRRC3BQ96PB8 259 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 TDP1Q9NUW8 608 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 CLEC4EQ9ULY5 219 aa20.56■□□□□ 0.88
CLN3-250ENST00000636839 OPHN1O60890 802 aa20.55■□□□□ 0.88
CLN3-250ENST00000636839 STK10O94804 968 aaKnown RBP20.55■□□□□ 0.88
CLN3-250ENST00000636839 MAPKAPK2P49137 400 aa20.55■□□□□ 0.88
CLN3-250ENST00000636839 SPARCL1Q14515 664 aa20.55■□□□□ 0.88
CLN3-250ENST00000636839 PCGF5Q86SE9 256 aa20.55■□□□□ 0.88
CLN3-250ENST00000636839 C9orf72Q96LT7 481 aa20.55■□□□□ 0.88
CLN3-250ENST00000636839 LINC00597Q9H2U6 94 aa20.55■□□□□ 0.88
CLN3-250ENST00000636839 SFXN1Q9H9B4 322 aa20.55■□□□□ 0.88
CLN3-250ENST00000636839 PIH1D1Q9NWS0 290 aaKnown RBP20.55■□□□□ 0.88
CLN3-250ENST00000636839 LSM7Q9UK45 103 aaKnown RBP20.55■□□□□ 0.88
CLN3-250ENST00000636839 TTLL3Q9Y4R7 772 aa20.55■□□□□ 0.88
CLN3-250ENST00000636839 PRRC2BQ5JSZ5 2229 aaKnown RBP20.55■□□□□ 0.88
CLN3-250ENST00000636839 AGPSO00116 658 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 MATN3O15232 486 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 NFKB1P19838 968 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 SERINC3Q13530 473 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 CXorf57Q6NSI4 855 aaKnown RBP20.54■□□□□ 0.88
CLN3-250ENST00000636839 FAM217AQ8IXS0 508 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 IQCKQ8N0W5 287 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 AGGF1Q8N302 714 aaeCLIP20.54■□□□□ 0.88
CLN3-250ENST00000636839 CARNMT1Q8N4J0 409 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 PDCD7Q8N8D1 485 aaKnown RBP20.54■□□□□ 0.88
CLN3-250ENST00000636839 LEMD2Q8NC56 503 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 ARHGEF2Q92974 986 aaKnown RBP20.54■□□□□ 0.88
CLN3-250ENST00000636839 TEKT5Q96M29 485 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 WDR83Q9BRX9 315 aaKnown RBP20.54■□□□□ 0.88
CLN3-250ENST00000636839 FAM129AQ9BZQ8 928 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 CDC42EP4Q9H3Q1 356 aaKnown RBP20.54■□□□□ 0.88
CLN3-250ENST00000636839 SAYSD1Q9NPB0 183 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 UBP1Q9NZI7 540 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.54■□□□□ 0.88
CLN3-250ENST00000636839 ARHGAP42A6NI28 874 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 CHADO15335 359 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 CLDN11O75508 207 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 DDX6P26196 483 aaKnown RBP eCLIP20.54■□□□□ 0.88
CLN3-250ENST00000636839 GNA12Q03113 381 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 SLC10A7Q0GE19 358 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms