RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 CLDN11O75508 207 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 IL1BP01584 269 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 MTIF2P46199 727 aaKnown RBP18.96■□□□□ 0.63
CLN3-241ENST00000635861 STK19P49842 368 aaPredicted RBP18.96■□□□□ 0.63
CLN3-241ENST00000635861 SLC6A3Q01959 620 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 AUHQ13825 339 aaKnown RBP18.96■□□□□ 0.63
CLN3-241ENST00000635861 MAN2A1Q16706 1144 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 BRMS1LQ5PSV4 323 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 OR6B2Q6IFH4 312 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 LAYNQ6UX15 382 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 FAM183BPQ6ZVS7 135 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 IRF2BP1Q8IU81 584 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 OR14C36Q8NHC7 312 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 FRS2Q8WU20 508 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 SYNCQ9H7C4 482 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 ERVMER34-1Q9H9K5 563 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 GDF3Q9NR23 364 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 FTSJ1Q9UET6 329 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 ATRXP46100 2492 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.95■□□□□ 0.62
CLN3-241ENST00000635861 A0A1W2PR77 199 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 E9PAM4 449 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 C1QTNF3-AMACRE9PGA6 284 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 TAF4O00268 1085 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 MAGEC1O60732 1142 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 DRD3P35462 400 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 SCNN1AP37088 669 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 ARRB1P49407 418 aaPredicted RBP18.95■□□□□ 0.62
CLN3-241ENST00000635861 CDH4P55283 916 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 ZNF177Q13360 481 aaPredicted RBP18.95■□□□□ 0.62
CLN3-241ENST00000635861 KCNJ12Q14500 433 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 TPD52L1Q16890 204 aaPredicted RBP18.95■□□□□ 0.62
CLN3-241ENST00000635861 KCNT1Q5JUK3 1230 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 IQCHQ86VS3 1027 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 ALG14Q96F25 216 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 PGAP3Q96FM1 320 aaPredicted RBP18.95■□□□□ 0.62
CLN3-241ENST00000635861 FEM1AQ9BSK4 669 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 EBF2Q9HAK2 575 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 SIX2Q9NPC8 291 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 AASDHPPTQ9NRN7 309 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 STAP1Q9ULZ2 295 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 DMTF1Q9Y222 760 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 TBC1D30Q9Y2I9 924 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 PCDHGA1Q9Y5H4 931 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 CHD5Q8TDI0 1954 aa18.95■□□□□ 0.62
CLN3-241ENST00000635861 SYNJ2BP-COX16A0A087WUM0 186 aa18.94■□□□□ 0.62
CLN3-241ENST00000635861 F9P00740 461 aa18.94■□□□□ 0.62
CLN3-241ENST00000635861 OVGP1Q12889 678 aa18.94■□□□□ 0.62
CLN3-241ENST00000635861 CAMK4Q16566 473 aa18.94■□□□□ 0.62
CLN3-241ENST00000635861 NAPEPLDQ6IQ20 393 aa18.94■□□□□ 0.62
CLN3-241ENST00000635861 PRPF39Q86UA1 669 aaKnown RBP18.94■□□□□ 0.62
CLN3-241ENST00000635861 CIR1Q86X95 450 aaPredicted RBP18.94■□□□□ 0.62
CLN3-241ENST00000635861 PASD1Q8IV76 773 aa18.94■□□□□ 0.62
CLN3-241ENST00000635861 COX16Q9P0S2 106 aa18.94■□□□□ 0.62
CLN3-241ENST00000635861 DNAJC12Q9UKB3 198 aa18.94■□□□□ 0.62
CLN3-241ENST00000635861 VANGL2Q9ULK5 521 aa18.94■□□□□ 0.62
CLN3-241ENST00000635861 HS3ST4Q9Y661 456 aa18.94■□□□□ 0.62
CLN3-241ENST00000635861 MYLKQ15746 1914 aa18.94■□□□□ 0.62
CLN3-241ENST00000635861 URB1O60287 2271 aaKnown RBP18.93■□□□□ 0.62
CLN3-241ENST00000635861 TBC1D3DA0A087WVF3 549 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 TBC1D3IA0A087WXS9 549 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 TBC1D3EA0A087X179 549 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 TBC1D3KA0A087X1G2 549 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 TBC1D3FA6NER0 549 aaPredicted RBP18.93■□□□□ 0.62
CLN3-241ENST00000635861 TBC1D3LB9A6J9 549 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 M0QYT0 321 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 KCNK3O14649 394 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 MCF2LO15068 1137 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 PLRG1O43660 514 aaKnown RBP18.93■□□□□ 0.62
CLN3-241ENST00000635861 GRAP2O75791 330 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 ERBB2P04626 1255 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 WNT1P04628 370 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 C1SP09871 688 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 TBC1D3HP0C7X1 549 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 CDH5P33151 784 aaPredicted RBP18.93■□□□□ 0.62
CLN3-241ENST00000635861 CLCN1P35523 988 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 KRT83P78385 493 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 NME3Q13232 169 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 SMAD1Q15797 465 aaKnown RBP18.93■□□□□ 0.62
CLN3-241ENST00000635861 PTPN20Q4JDL3 420 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 TBC1D3GQ6DHY5 549 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 TBC1D3CQ6IPX1 549 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 TRIM69Q86WT6 500 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 FAM71AQ8IYT1 594 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 TBC1D3Q8IZP1 549 aaPredicted RBP18.93■□□□□ 0.62
CLN3-241ENST00000635861 MFSD2AQ8NA29 543 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 SERAC1Q96JX3 654 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 CCDC114Q96M63 670 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 NPY6RQ99463 290 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 ARHGEF38Q9NXL2 777 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 VPS28Q9UK41 221 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 LHX6Q9UPM6 363 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 HS3ST2Q9Y278 367 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 OR51B4Q9Y5P0 310 aa18.93■□□□□ 0.62
CLN3-241ENST00000635861 TLR4O00206 839 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 FOXN3O00409 490 aaPredicted RBP18.92■□□□□ 0.62
CLN3-241ENST00000635861 PAGE1O75459 146 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 RXRGP48443 463 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 CXCR3P49682 368 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 NXPH1P58417 271 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms