RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 RMDN1Q96DB5 314 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 SPG21Q9NZD8 308 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 TXNDC16Q9P2K2 825 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 YIPF1Q9Y548 306 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 CPQQ9Y646 472 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 TTC28Q96AY4 2481 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 H0Y626 953 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 FBXO21O94952 628 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 VAPBO95292 243 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 GNRH1P01148 92 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 C8AP07357 584 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 EPCAMP16422 314 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 SLC6A4P31645 630 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 STIP1P31948 543 aaKnown RBP10.77□□□□□ -0.69
VPS11-208ENST00000621676 AARSP49588 968 aaKnown RBP eCLIP10.77□□□□□ -0.69
VPS11-208ENST00000621676 ZDHHC17Q8IUH5 632 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 ZCCHC9Q8N567 271 aaKnown RBP10.77□□□□□ -0.69
VPS11-208ENST00000621676 OXNAD1Q96HP4 312 aaPredicted RBP10.77□□□□□ -0.69
VPS11-208ENST00000621676 FAM111AQ96PZ2 611 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 TNKS2Q9H2K2 1166 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 PIDD1Q9HB75 910 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 TRPM5Q9NZQ8 1165 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 PCDHB12Q9Y5F1 795 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 ATP8B3O60423 1300 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 GRM6O15303 877 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 STK10O94804 968 aaKnown RBP10.77□□□□□ -0.69
VPS11-208ENST00000621676 TIMP1P01033 207 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 DNAJB1P25685 340 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 SLC8A1P32418 973 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 HARS2P49590 506 aaKnown RBP10.77□□□□□ -0.69
VPS11-208ENST00000621676 COPS2P61201 443 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 PDK1Q15118 436 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 ATXN7L2Q5T6C5 722 aaPredicted RBP10.77□□□□□ -0.69
VPS11-208ENST00000621676 TRIM68Q6AZZ1 485 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 PPP1R2P3Q6NXS1 205 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 RHBDF2Q6PJF5 856 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 TNS4Q8IZW8 715 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 ACVR1CQ8NER5 493 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 ZNF461Q8TAF7 563 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 ZSCAN18Q8TBC5 510 aaPredicted RBP10.77□□□□□ -0.69
VPS11-208ENST00000621676 NDNQ99608 321 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 LINC00597Q9H2U6 94 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 TRABDQ9H4I3 376 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 PAK5Q9P286 719 aa10.77□□□□□ -0.69
VPS11-208ENST00000621676 LRG1P02750 347 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 POLD3Q15054 466 aaPredicted RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 CNGA3Q16281 694 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 RPAINQ86UA6 219 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 CDKL3Q8IVW4 592 aaPredicted RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 KCTD13Q8WZ19 329 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 FAM96AQ9H5X1 160 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 CHKBQ9Y259 395 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 FCF1Q9Y324 198 aaKnown RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 CFAP54Q96N23 3096 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 NCOR1O75376 2440 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 PHGDHO43175 533 aaKnown RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 ATP8B1O43520 1251 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 CSH1P0DML2 217 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 CSH2P0DML3 217 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 CTPS1P17812 591 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 ADRA1DP25100 572 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 MZF1P28698 734 aaPredicted RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 GBP2P32456 591 aaPredicted RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 CD68P34810 354 aaPredicted RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 SLC9A4Q6AI14 798 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 CNKSR3Q6P9H4 555 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 UNC5AQ6ZN44 842 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 GRASPQ7Z6J2 395 aaPredicted RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 DENND6AQ8IWF6 608 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 REM2Q8IYK8 340 aaPredicted RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 CMTM8Q8IZV2 173 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 C12orf50Q8NA57 414 aaPredicted RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 CENPIQ92674 756 aaPredicted RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 SLC2A13Q96QE2 648 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 IARS2Q9NSE4 1012 aaKnown RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 C20orf96Q9NUD7 363 aaPredicted RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 ABCF3Q9NUQ8 709 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 CRYL1Q9Y2S2 319 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 ZDBF2Q9HCK1 2354 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 AURKAO14965 403 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 PPP1R12AO14974 1030 aaPredicted RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 MT-ND3P03897 115 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 HLA-DQB2P05538 268 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 NMBRP28336 390 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 MDH1P40925 334 aaKnown RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 GARSP41250 739 aaKnown RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 MCCD1P59942 119 aaPredicted RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 NUMA1Q14980 2115 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 VEPH1Q14D04 833 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 TCEAL1Q15170 157 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 RAB41Q5JT25 222 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 ARMC12Q5T9G4 340 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 RAPH1Q70E73 1250 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 LRRC34Q8IZ02 419 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 IQCGQ9H095 443 aaKnown RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 SARS2Q9NP81 518 aaKnown RBP10.76□□□□□ -0.69
VPS11-208ENST00000621676 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.76□□□□□ -0.69
VPS11-208ENST00000621676 SLC12A6Q9UHW9 1150 aa10.76□□□□□ -0.69
VPS11-208ENST00000621676 ZNF638Q14966 1978 aaKnown RBP10.75□□□□□ -0.69
VPS11-208ENST00000621676 A0A0A0MRY4 1105 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms