RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 OR52K2Q8NGK3 314 aa13.55□□□□□ -0.24
RPS28-204ENST00000602140 FRS2Q8WU20 508 aa13.55□□□□□ -0.24
RPS28-204ENST00000602140 SHC3Q92529 594 aa13.55□□□□□ -0.24
RPS28-204ENST00000602140 ALG14Q96F25 216 aa13.55□□□□□ -0.24
RPS28-204ENST00000602140 GDF3Q9NR23 364 aa13.55□□□□□ -0.24
RPS28-204ENST00000602140 KIAA1468Q9P260 1216 aa13.55□□□□□ -0.24
RPS28-204ENST00000602140 VANGL2Q9ULK5 521 aa13.55□□□□□ -0.24
RPS28-204ENST00000602140 PCDHGC3Q9UN70 934 aa13.55□□□□□ -0.24
RPS28-204ENST00000602140 CABIN1Q9Y6J0 2220 aa13.55□□□□□ -0.24
RPS28-204ENST00000602140 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.54□□□□□ -0.24
RPS28-204ENST00000602140 TRABD2BA6NFA1 517 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 ITGAVP06756 1048 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 KRT9P35527 623 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 GGCXP38435 758 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 PTK2Q05397 1052 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 ZNF177Q13360 481 aaPredicted RBP13.54□□□□□ -0.24
RPS28-204ENST00000602140 SHBQ15464 509 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 SMAD1Q15797 465 aaKnown RBP13.54□□□□□ -0.24
RPS28-204ENST00000602140 SLC45A4Q5BKX6 768 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 OLFML1Q6UWY5 402 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 DSG4Q86SJ6 1040 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 IRF2BP1Q8IU81 584 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 C1orf131Q8NDD1 294 aaKnown RBP13.54□□□□□ -0.24
RPS28-204ENST00000602140 OR8D1Q8WZ84 308 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 NOX5Q96PH1 765 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 PPP1R9BQ96SB3 815 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 FEM1AQ9BSK4 669 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 SLC25A13Q9UJS0 675 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 AJAP1Q9UKB5 411 aaPredicted RBP13.54□□□□□ -0.24
RPS28-204ENST00000602140 SARDHQ9UL12 918 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 TPX2Q9ULW0 747 aaKnown RBP13.54□□□□□ -0.24
RPS28-204ENST00000602140 RAXQ9Y2V3 346 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 HS3ST4Q9Y661 456 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 CELSR3Q9NYQ7 3312 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 CACNA1GO43497 2377 aa13.54□□□□□ -0.24
RPS28-204ENST00000602140 NYNRINQ9P2P1 1898 aaKnown RBP13.53□□□□□ -0.24
RPS28-204ENST00000602140 GTPBP10A4D1E9 387 aaKnown RBP13.53□□□□□ -0.24
RPS28-204ENST00000602140 M0QYT0 321 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 TLR4O00206 839 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 CBX4O00257 560 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 LATO43561 262 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 ATP9BO43861 1147 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 RTN2O75298 545 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 PAGE1O75459 146 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 LDOC1O95751 146 aaPredicted RBP13.53□□□□□ -0.24
RPS28-204ENST00000602140 ERBB2P04626 1255 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 MAT2AP31153 395 aaKnown RBP13.53□□□□□ -0.24
RPS28-204ENST00000602140 MTIF2P46199 727 aaKnown RBP13.53□□□□□ -0.24
RPS28-204ENST00000602140 VASPP50552 380 aaPredicted RBP13.53□□□□□ -0.24
RPS28-204ENST00000602140 NXPH1P58417 271 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 SLC6A3Q01959 620 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 CYP4F3Q08477 520 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 MTA1Q13330 715 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 CAMK2BQ13554 666 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 COL9A2Q14055 689 aaPredicted RBP13.53□□□□□ -0.24
RPS28-204ENST00000602140 DLG2Q15700 870 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 COL28A1Q2UY09 1125 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 POM121L1PQ3SYA9 428 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 FAM46CQ5VWP2 391 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 Q6ZVU0 165 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 SLC26A9Q7LBE3 791 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 C14orf80Q86SX3 495 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 PRPF39Q86UA1 669 aaKnown RBP13.53□□□□□ -0.24
RPS28-204ENST00000602140 SAP25Q8TEE9 199 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 FAM131CQ96AQ9 280 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 CNDP2Q96KP4 475 aaKnown RBP13.53□□□□□ -0.24
RPS28-204ENST00000602140 SIK2Q9H0K1 926 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 KDM4CQ9H3R0 1056 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 SYNCQ9H7C4 482 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 SIX2Q9NPC8 291 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 PLCB1Q9NQ66 1216 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 ARHGAP20Q9P2F6 1191 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 DKK4Q9UBT3 224 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 VPS28Q9UK41 221 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 OR51B4Q9Y5P0 310 aa13.53□□□□□ -0.24
RPS28-204ENST00000602140 TP53BP1Q12888 1972 aaPredicted RBP13.52□□□□□ -0.24
RPS28-204ENST00000602140 FOXN3O00409 490 aaPredicted RBP13.52□□□□□ -0.25
RPS28-204ENST00000602140 ENC1O14682 589 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 YKT6O15498 198 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 SLC7A4O43246 635 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 PLRG1O43660 514 aaKnown RBP13.52□□□□□ -0.25
RPS28-204ENST00000602140 BNIP3LO60238 219 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 CLDN11O75508 207 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 DAB1O75553 588 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 PNMA6AP0CW24 399 aaPredicted RBP13.52□□□□□ -0.25
RPS28-204ENST00000602140 ZNF18P17022 549 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 EPHA8P29322 1005 aaPredicted RBP13.52□□□□□ -0.25
RPS28-204ENST00000602140 NOS2P35228 1153 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 CLCN1P35523 988 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 ARRB1P49407 418 aaPredicted RBP13.52□□□□□ -0.25
RPS28-204ENST00000602140 SNX16P57768 344 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 CNTN1Q12860 1018 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 BNIP3Q12983 259 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 DNAJC3Q13217 504 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 PTPN20Q4JDL3 420 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 NAPEPLDQ6IQ20 393 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 SLC47A2Q86VL8 602 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 SH2D3CQ8N5H7 860 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 EID2Q8N6I1 236 aa13.52□□□□□ -0.25
RPS28-204ENST00000602140 HNRNPLLQ8WVV9 542 aaKnown RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms