RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 EPHB2P29323 1055 aa19.86■□□□□ 0.77
UPF1-212ENST00000601689 VASPP50552 380 aaPredicted RBP19.86■□□□□ 0.77
UPF1-212ENST00000601689 CREB5Q02930 508 aa19.86■□□□□ 0.77
UPF1-212ENST00000601689 MAP7D1Q3KQU3 841 aa19.86■□□□□ 0.77
UPF1-212ENST00000601689 ERMARDQ5T6L9 678 aa19.86■□□□□ 0.77
UPF1-212ENST00000601689 IL31Q6EBC2 164 aa19.86■□□□□ 0.77
UPF1-212ENST00000601689 ZNF354CQ86Y25 554 aa19.86■□□□□ 0.77
UPF1-212ENST00000601689 ZNF366Q8N895 744 aa19.86■□□□□ 0.77
UPF1-212ENST00000601689 DCAF4L2Q8NA75 395 aa19.86■□□□□ 0.77
UPF1-212ENST00000601689 SPON2Q9BUD6 331 aa19.86■□□□□ 0.77
UPF1-212ENST00000601689 MKRN2Q9H000 416 aaKnown RBP19.86■□□□□ 0.77
UPF1-212ENST00000601689 THAP2Q9H0W7 228 aa19.86■□□□□ 0.77
UPF1-212ENST00000601689 PRSS16Q9NQE7 514 aa19.86■□□□□ 0.77
UPF1-212ENST00000601689 ITM2CQ9NQX7 267 aa19.86■□□□□ 0.77
UPF1-212ENST00000601689 FZD10Q9ULW2 581 aa19.86■□□□□ 0.77
UPF1-212ENST00000601689 RIF1Q5UIP0 2472 aaKnown RBP19.86■□□□□ 0.77
UPF1-212ENST00000601689 DMDP11532 3685 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 I6L893 689 aaPredicted RBP19.85■□□□□ 0.77
UPF1-212ENST00000601689 FGF10O15520 208 aaPredicted RBP19.85■□□□□ 0.77
UPF1-212ENST00000601689 DAPK3O43293 454 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 LRIG2O94898 1065 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 H2AFZP0C0S5 128 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 CD6P30203 668 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 ZNF135P52742 658 aaPredicted RBP19.85■□□□□ 0.77
UPF1-212ENST00000601689 ADKP55263 362 aaKnown RBP19.85■□□□□ 0.77
UPF1-212ENST00000601689 GEMIN4P57678 1058 aaKnown RBP19.85■□□□□ 0.77
UPF1-212ENST00000601689 SLC20A2Q08357 652 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 SPEM2Q0P670 501 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 MAPK8IP2Q13387 824 aaPredicted RBP19.85■□□□□ 0.77
UPF1-212ENST00000601689 SYCP2LQ5T4T6 812 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 H2AFVQ71UI9 128 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 CYP2U1Q7Z449 544 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 PSTKQ8IV42 348 aaKnown RBP19.85■□□□□ 0.77
UPF1-212ENST00000601689 DCLK2Q8N568 766 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 C12orf50Q8NA57 414 aaPredicted RBP19.85■□□□□ 0.77
UPF1-212ENST00000601689 ATP11CQ8NB49 1132 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 GANCQ8TET4 914 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 FOXJ1Q92949 421 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 ARRDC1-AS1Q9H2J1 176 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 CD248Q9HCU0 757 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 ATP13A1Q9HD20 1204 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 TMEM248Q9NWD8 314 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 ANAPC7Q9UJX3 599 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 USP34Q70CQ2 3546 aa19.85■□□□□ 0.77
UPF1-212ENST00000601689 IGHV1OR15-9A0A0B4J2B8 117 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 RAMP2O60895 175 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 SDHBP21912 280 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 CTSOP43234 321 aaPredicted RBP19.84■□□□□ 0.77
UPF1-212ENST00000601689 RECQLP46063 649 aaPredicted RBP19.84■□□□□ 0.77
UPF1-212ENST00000601689 IRAK1P51617 712 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 CLCN6P51797 869 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 COPAP53621 1224 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 TPI1P60174 286 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 GNA12Q03113 381 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 GFPT1Q06210 699 aaPredicted RBP19.84■□□□□ 0.77
UPF1-212ENST00000601689 ELAVL3Q14576 367 aaKnown RBP19.84■□□□□ 0.77
UPF1-212ENST00000601689 LYSMD4Q5XG99 296 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 DNAAF5Q86Y56 855 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 KIAA2013Q8IYS2 634 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 MRGPRX3Q96LB0 322 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 NUP85Q9BW27 656 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 RBSNQ9H1K0 784 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 MAGEH1Q9H213 219 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 VPS45Q9NRW7 570 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 USP36Q9P275 1121 aaKnown RBP19.84■□□□□ 0.77
UPF1-212ENST00000601689 UVRAGQ9P2Y5 699 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 PCSK1NQ9UHG2 260 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 SLCO3A1Q9UIG8 710 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 AP4E1Q9UPM8 1137 aa19.84■□□□□ 0.77
UPF1-212ENST00000601689 NUP205Q92621 2012 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 TTC34A8MYJ7 566 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 CBX4O00257 560 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 SIN3BO75182 1162 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 BCKDHBP21953 392 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 PCK1P35558 622 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 MPLP40238 635 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 TPMTP51580 245 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 GALCP54803 685 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 OGDHQ02218 1023 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 LMNB2Q03252 620 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 CCDC15Q0P6D6 951 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 POLD3Q15054 466 aaPredicted RBP19.83■□□□□ 0.77
UPF1-212ENST00000601689 CSRP2Q16527 193 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 HADHQ16836 314 aaKnown RBP19.83■□□□□ 0.77
UPF1-212ENST00000601689 RAB6CQ53S08 254 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 BOLA3Q53S33 107 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 FAM46CQ5VWP2 391 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 RABEPKQ7Z6M1 372 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 CACUL1Q86Y37 369 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 TMEFF1Q8IYR6 380 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 OR8D1Q8WZ84 308 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 ALG14Q96F25 216 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 MYO19Q96H55 970 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 MRFAP1L1Q96HT8 127 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 RAB6CQ9H0N0 254 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 SLC6A17Q9H1V8 727 aa19.83■□□□□ 0.77
UPF1-212ENST00000601689 RSPH9Q9H1X1 276 aaPredicted RBP19.83■□□□□ 0.77
UPF1-212ENST00000601689 DHX35Q9H5Z1 703 aaKnown RBP19.83■□□□□ 0.77
UPF1-212ENST00000601689 NHEJ1Q9H9Q4 299 aaPredicted RBP19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms