RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 RAMP2O60895 175 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 ADAM23O75077 832 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 CD48P09326 243 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 AMPD1P23109 780 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 NTSR1P30989 418 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 ETFBP38117 255 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 CCR3P51677 355 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 YBEYP58557 167 aaPredicted RBP19.83■□□□□ 0.77
UPF1-209ENST00000600310 DPYSL3Q14195 570 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 ZNF234Q14588 700 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 ZFYVE27Q5T4F4 411 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 C1orf210Q8IVY1 113 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 SYCE1Q8N0S2 351 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 UMODL1-AS1Q8N2C9 162 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 DCAF4L2Q8NA75 395 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 OR7D4Q8NG98 312 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 PSMB7Q99436 277 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 ZNF670Q9BS34 389 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 MAGEH1Q9H213 219 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 NOL6Q9H6R4 1146 aaKnown RBP19.83■□□□□ 0.77
UPF1-209ENST00000600310 KLHL11Q9NVR0 708 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 DDX56Q9NY93 547 aaKnown RBP19.83■□□□□ 0.77
UPF1-209ENST00000600310 MMP17Q9ULZ9 603 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 GUCA1BQ9UMX6 200 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 STON1Q9Y6Q2 735 aa19.83■□□□□ 0.77
UPF1-209ENST00000600310 ZDBF2Q9HCK1 2354 aa19.83■□□□□ 0.76
UPF1-209ENST00000600310 SGK1O00141 431 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 DCLK1O15075 740 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 PALMO75781 387 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 PAPSS2O95340 614 aaPredicted RBP19.82■□□□□ 0.76
UPF1-209ENST00000600310 SRPRAP08240 638 aaKnown RBP19.82■□□□□ 0.76
UPF1-209ENST00000600310 TNNT1P13805 278 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 KDELR1P24390 212 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 IL12RB1P42701 662 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 CXCL12P48061 93 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 VASPP50552 380 aaPredicted RBP19.82■□□□□ 0.76
UPF1-209ENST00000600310 ECT2LQ008S8 904 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 MMRN1Q13201 1228 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 POLD3Q15054 466 aaPredicted RBP19.82■□□□□ 0.76
UPF1-209ENST00000600310 SDE2Q6IQ49 451 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 VSIG1Q86XK7 387 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 KDM1BQ8NB78 822 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 ARHGEF2Q92974 986 aaKnown RBP19.82■□□□□ 0.76
UPF1-209ENST00000600310 FAF2Q96CS3 445 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 MRGPRX3Q96LB0 322 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 GABRG3Q99928 467 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 C2orf49Q9BVC5 232 aaPredicted RBP19.82■□□□□ 0.76
UPF1-209ENST00000600310 CALN1Q9BXU9 219 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 ACE2Q9BYF1 805 aaPredicted RBP19.82■□□□□ 0.76
UPF1-209ENST00000600310 KLC2Q9H0B6 622 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 C2orf42Q9NWW7 574 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 CACNA2D2Q9NY47 1150 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 ERVW-1Q9UQF0 538 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 CAPN6Q9Y6Q1 641 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 DOCK4Q8N1I0 1966 aa19.82■□□□□ 0.76
UPF1-209ENST00000600310 LRRD1A4D1F6 860 aa19.81■□□□□ 0.76
UPF1-209ENST00000600310 ZNF487B1APH4 448 aa19.81■□□□□ 0.76
UPF1-209ENST00000600310 LAMTOR5O43504 91 aa19.81■□□□□ 0.76
UPF1-209ENST00000600310 ACVRL1P37023 503 aa19.81■□□□□ 0.76
UPF1-209ENST00000600310 CTSOP43234 321 aaPredicted RBP19.81■□□□□ 0.76
UPF1-209ENST00000600310 NDST2P52849 883 aa19.81■□□□□ 0.76
UPF1-209ENST00000600310 SATB1Q01826 763 aa19.81■□□□□ 0.76
UPF1-209ENST00000600310 PARP15Q460N3 678 aa19.81■□□□□ 0.76
UPF1-209ENST00000600310 NT5DC3Q86UY8 548 aa19.81■□□□□ 0.76
UPF1-209ENST00000600310 LZTR1Q8N653 840 aa19.81■□□□□ 0.76
UPF1-209ENST00000600310 MYO19Q96H55 970 aa19.81■□□□□ 0.76
UPF1-209ENST00000600310 SPON2Q9BUD6 331 aa19.81■□□□□ 0.76
UPF1-209ENST00000600310 TMEM245Q9H330 911 aa19.81■□□□□ 0.76
UPF1-209ENST00000600310 ATP13A1Q9HD20 1204 aa19.81■□□□□ 0.76
UPF1-209ENST00000600310 PRMT8Q9NR22 394 aaPredicted RBP19.81■□□□□ 0.76
UPF1-209ENST00000600310 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.81■□□□□ 0.76
UPF1-209ENST00000600310 TRIOO75962 3097 aa19.81■□□□□ 0.76
UPF1-209ENST00000600310 MUC6Q6W4X9 2439 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 C3orf70A6NLC5 250 aaPredicted RBP19.8■□□□□ 0.76
UPF1-209ENST00000600310 WASH3PC4AMC7 463 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 GALR2O43603 387 aaPredicted RBP19.8■□□□□ 0.76
UPF1-209ENST00000600310 SNAP91O60641 907 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 ZMPSTE24O75844 475 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 KRT1P04264 644 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 CTNNA2P26232 953 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 CTNNA1P35221 906 aaKnown RBP19.8■□□□□ 0.76
UPF1-209ENST00000600310 WASP42768 502 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 NUMBP49757 651 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 CRY1Q16526 586 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 FNDC3BQ53EP0 1204 aaKnown RBP19.8■□□□□ 0.76
UPF1-209ENST00000600310 ANKRD20A8PQ5CZ79 823 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 AFMIDQ63HM1 303 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 IL31Q6EBC2 164 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 TMCO3Q6UWJ1 677 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 SERPINA13PQ6UXR4 307 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 KATNAL2Q8IYT4 538 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 MAML2Q8IZL2 1156 aaPredicted RBP19.8■□□□□ 0.76
UPF1-209ENST00000600310 NPWQ8N729 165 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 PCDH19Q8TAB3 1148 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 KRT35Q92764 455 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 LRRC19Q9H756 370 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 LZTFL1Q9NQ48 299 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 POLR3BQ9NW08 1133 aaPredicted RBP19.8■□□□□ 0.76
UPF1-209ENST00000600310 VPS51Q9UID3 782 aa19.8■□□□□ 0.76
UPF1-209ENST00000600310 AMFRQ9UKV5 643 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms