RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 TMEM145Q8NBT3 493 aa6.31□□□□□ -1.4
VRK3-220ENST00000600259 SNRNP27Q8WVK2 155 aaKnown RBP6.31□□□□□ -1.4
VRK3-220ENST00000600259 WBP1Q96G27 269 aa6.31□□□□□ -1.4
VRK3-220ENST00000600259 SLC4A5Q9BY07 1137 aa6.31□□□□□ -1.4
VRK3-220ENST00000600259 SEMA4CQ9C0C4 833 aa6.31□□□□□ -1.4
VRK3-220ENST00000600259 MIS12Q9H081 205 aa6.31□□□□□ -1.4
VRK3-220ENST00000600259 GOLPH3LQ9H4A5 285 aa6.31□□□□□ -1.4
VRK3-220ENST00000600259 UCKL1Q9NWZ5 548 aa6.31□□□□□ -1.4
VRK3-220ENST00000600259 PPM1HQ9ULR3 514 aa6.31□□□□□ -1.4
VRK3-220ENST00000600259 CNTN6Q9UQ52 1028 aa6.31□□□□□ -1.4
VRK3-220ENST00000600259 CLCA2Q9UQC9 943 aa6.31□□□□□ -1.4
VRK3-220ENST00000600259 DMTF1Q9Y222 760 aa6.31□□□□□ -1.4
VRK3-220ENST00000600259 CA5BQ9Y2D0 317 aa6.31□□□□□ -1.4
VRK3-220ENST00000600259 PCDHB1Q9Y5F3 818 aa6.31□□□□□ -1.4
VRK3-220ENST00000600259 U3KQA8 63 aa6.31□□□□□ -1.4
VRK3-220ENST00000600259 A0A1W2PQ27 194 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 A0A1W2PQ64 194 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 PRAMEF26H0Y7S4 382 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 MCF2LO15068 1137 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 SLC7A4O43246 635 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 LZTS3O60299 673 aaPredicted RBP6.3□□□□□ -1.4
VRK3-220ENST00000600259 OPA1O60313 960 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 SDC3O75056 442 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 FBXO21O94952 628 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 ZNF202O95125 648 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 IL1BP01584 269 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 EPB41P11171 864 aaKnown RBP6.3□□□□□ -1.4
VRK3-220ENST00000600259 TACR2P21452 398 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 TBXAS1P24557 533 aaPredicted RBP6.3□□□□□ -1.4
VRK3-220ENST00000600259 MAT2AP31153 395 aaKnown RBP6.3□□□□□ -1.4
VRK3-220ENST00000600259 ACTN2P35609 894 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 NUDT1P36639 197 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 YWHAEP62258 255 aaKnown RBP6.3□□□□□ -1.4
VRK3-220ENST00000600259 SKOR1P84550 965 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 FKBP3Q00688 224 aaKnown RBP6.3□□□□□ -1.4
VRK3-220ENST00000600259 CCDC173Q0VFZ6 552 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 CNTN1Q12860 1018 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 SLC12A1Q13621 1099 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 ELAVL3Q14576 367 aaKnown RBP6.3□□□□□ -1.4
VRK3-220ENST00000600259 RAP1GAP2Q684P5 730 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 TMEM270Q6UE05 265 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 TMEM110Q86TL2 294 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 CCAR2Q8N163 923 aaKnown RBP6.3□□□□□ -1.4
VRK3-220ENST00000600259 OR4C6Q8NH72 309 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 SPATA20Q8TB22 786 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 STK32AQ8WU08 396 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 BAP1Q92560 729 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 TTC9Q92623 222 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 PRR11Q96HE9 360 aaPredicted RBP6.3□□□□□ -1.4
VRK3-220ENST00000600259 BMFQ96LC9 184 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 KREMEN1Q96MU8 473 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 SERPINB11Q96P15 392 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 SPAG5Q96R06 1193 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 DDX50Q9BQ39 737 aaKnown RBP6.3□□□□□ -1.4
VRK3-220ENST00000600259 ASCL3Q9NQ33 180 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 KLHL11Q9NVR0 708 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 PCDHB4Q9Y5E5 795 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 MYLKQ15746 1914 aa6.3□□□□□ -1.4
VRK3-220ENST00000600259 A0A1B0GVM2 712 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 J3QKU1 62 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 M0QYV0 167 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 ERVH48-1M5A8F1 160 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 SLC16A3O15427 465 aaKnown RBP6.29□□□□□ -1.4
VRK3-220ENST00000600259 MAGEC1O60732 1142 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 RNGTTO60942 597 aaKnown RBP6.29□□□□□ -1.4
VRK3-220ENST00000600259 PIAS2O75928 621 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 MOCS3O95396 460 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 TRUB2O95900 331 aaKnown RBP6.29□□□□□ -1.4
VRK3-220ENST00000600259 MOCS2O96007 188 aaPredicted RBP6.29□□□□□ -1.4
VRK3-220ENST00000600259 MT-CO1P00395 513 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 CTSLP07711 333 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 CKMT1AP12532 417 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 MYF5P13349 255 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 PDGFRAP16234 1089 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 LSSP48449 732 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 FMO5P49326 533 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 NUMBP49757 651 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 IRAK1P51617 712 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 CXADRP78310 365 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 KCNMA1Q12791 1236 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 CDH18Q13634 790 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 STAT4Q14765 748 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 STILQ15468 1287 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 TAF5Q15542 800 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 DLG2Q15700 870 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 ZNF284Q2VY69 593 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 C5orf22Q49AR2 442 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 SLC45A4Q5BKX6 768 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 PIP5KL1Q5T9C9 394 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 TCERG1LQ5VWI1 586 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 FBXL22Q6P050 247 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 DENND1BQ6P3S1 775 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 IGF2-ASQ6U949 168 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 KDM7AQ6ZMT4 941 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 ABI3BPQ7Z7G0 1075 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 C14orf80Q86SX3 495 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 CIR1Q86X95 450 aaPredicted RBP6.29□□□□□ -1.4
VRK3-220ENST00000600259 ARHGEF19Q8IW93 802 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 WDTC1Q8N5D0 677 aa6.29□□□□□ -1.4
VRK3-220ENST00000600259 FAM181AQ8N9Y4 354 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms