RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 TBC1D3FA6NER0 549 aaPredicted RBP10.07□□□□□ -0.8
VRK3-216ENST00000599342 TBC1D3LB9A6J9 549 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 H0Y8X5 98 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 KCNK3O14649 394 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 SLC7A4O43246 635 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 ATP9BO43861 1147 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 BNIP3LO60238 219 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 PCDHGA12O60330 932 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 LSM8O95777 96 aaKnown RBP10.07□□□□□ -0.8
VRK3-216ENST00000599342 F9P00740 461 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 TPM2P07951 284 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 RHOCP08134 193 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 TBC1D3HP0C7X1 549 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 UCHL3P15374 230 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 VAV1P15498 845 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 CD38P28907 300 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 CDH5P33151 784 aaPredicted RBP10.07□□□□□ -0.8
VRK3-216ENST00000599342 SCNN1AP37088 669 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 CTSKP43235 329 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 VASPP50552 380 aaPredicted RBP10.07□□□□□ -0.8
VRK3-216ENST00000599342 IRAK1P51617 712 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 CCR5P51681 352 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 DEUP1Q05D60 604 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 ACBD5Q5T8D3 534 aaPredicted RBP10.07□□□□□ -0.8
VRK3-216ENST00000599342 KLHDC7AQ5VTJ3 777 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 TBC1D3GQ6DHY5 549 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 TBC1D3CQ6IPX1 549 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 LRRC31Q6UY01 552 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.07□□□□□ -0.8
VRK3-216ENST00000599342 Q6ZVU0 165 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 SLCO6A1Q86UG4 719 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 ERICH1Q86X53 443 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 TBC1D3Q8IZP1 549 aaPredicted RBP10.07□□□□□ -0.8
VRK3-216ENST00000599342 FRS2Q8WU20 508 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 C18orf8Q96DM3 657 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 SERAC1Q96JX3 654 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 NPY6RQ99463 290 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 ELF4Q99607 663 aaPredicted RBP10.07□□□□□ -0.8
VRK3-216ENST00000599342 FEM1AQ9BSK4 669 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 C2orf49Q9BVC5 232 aaPredicted RBP10.07□□□□□ -0.8
VRK3-216ENST00000599342 KDM4CQ9H3R0 1056 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 GDF3Q9NR23 364 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 PIGVQ9NUD9 493 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 ARHGEF38Q9NXL2 777 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 FTSJ1Q9UET6 329 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 BTBD3Q9Y2F9 522 aa10.07□□□□□ -0.8
VRK3-216ENST00000599342 FARP1Q9Y4F1 1045 aaPredicted RBP10.07□□□□□ -0.8
VRK3-216ENST00000599342 PCNX2A6NKB5 2137 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 NUMA1Q14980 2115 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 MAP1BP46821 2468 aaKnown RBP10.06□□□□□ -0.8
VRK3-216ENST00000599342 A0A1B0GTQ1 180 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 FAM170AA1A519 330 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 SRRM3A6NNA2 597 aaPredicted RBP10.06□□□□□ -0.8
VRK3-216ENST00000599342 ALOX15BO15296 676 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 YKT6O15498 198 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 TNFSF14O43557 240 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 ADCY5O95622 1261 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 ITGAVP06756 1048 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 ATXN1LP0C7T5 689 aaKnown RBP10.06□□□□□ -0.8
VRK3-216ENST00000599342 EEF1GP26641 437 aaKnown RBP10.06□□□□□ -0.8
VRK3-216ENST00000599342 DRD3P35462 400 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 GABRB2P47870 512 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 ARRB1P49407 418 aaPredicted RBP10.06□□□□□ -0.8
VRK3-216ENST00000599342 CXCR3P49682 368 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 KCNMA1Q12791 1236 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 DLG2Q15700 870 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 SLC25A52Q3SY17 297 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 POM121L1PQ3SYA9 428 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 CCDC157Q569K6 752 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 TCP11X2Q5H9J9 407 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 CT47A1Q5JQC4 288 aaPredicted RBP10.06□□□□□ -0.8
VRK3-216ENST00000599342 KCNT1Q5JUK3 1230 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 OTUD1Q5VV17 481 aaPredicted RBP10.06□□□□□ -0.8
VRK3-216ENST00000599342 NAPEPLDQ6IQ20 393 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 C14orf80Q86SX3 495 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 PRPF39Q86UA1 669 aaKnown RBP10.06□□□□□ -0.8
VRK3-216ENST00000599342 XYLT1Q86Y38 959 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 SH2D3CQ8N5H7 860 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 ATP11CQ8NB49 1132 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 OR52K2Q8NGK3 314 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 PIP4K2CQ8TBX8 421 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 ALG14Q96F25 216 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 PGAP3Q96FM1 320 aaPredicted RBP10.06□□□□□ -0.8
VRK3-216ENST00000599342 TBCBQ99426 244 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 EBF2Q9HAK2 575 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 SAMSN1Q9NSI8 373 aaKnown RBP10.06□□□□□ -0.8
VRK3-216ENST00000599342 TBC1D30Q9Y2I9 924 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 CACNA1EQ15878 2313 aa10.06□□□□□ -0.8
VRK3-216ENST00000599342 NYNRINQ9P2P1 1898 aaKnown RBP10.06□□□□□ -0.8
VRK3-216ENST00000599342 ZFHX4Q86UP3 3567 aa10.05□□□□□ -0.8
VRK3-216ENST00000599342 E9PAM4 449 aa10.05□□□□□ -0.8
VRK3-216ENST00000599342 F8VZ95 297 aa10.05□□□□□ -0.8
VRK3-216ENST00000599342 GOLGA8SH3BPF8 625 aa10.05□□□□□ -0.8
VRK3-216ENST00000599342 PLK4O00444 970 aa10.05□□□□□ -0.8
VRK3-216ENST00000599342 MCF2LO15068 1137 aa10.05□□□□□ -0.8
VRK3-216ENST00000599342 PLRG1O43660 514 aaKnown RBP10.05□□□□□ -0.8
VRK3-216ENST00000599342 MAGEC1O60732 1142 aa10.05□□□□□ -0.8
VRK3-216ENST00000599342 RTN2O75298 545 aa10.05□□□□□ -0.8
VRK3-216ENST00000599342 CNTN5O94779 1100 aa10.05□□□□□ -0.8
VRK3-216ENST00000599342 TFE3P19532 575 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms