RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 PPP2CAP67775 309 aa24.62■■□□□ 1.53
LSM4-202ENST00000593564 APBA1Q02410 837 aa24.62■■□□□ 1.53
LSM4-202ENST00000593564 CENPCQ03188 943 aa24.62■■□□□ 1.53
LSM4-202ENST00000593564 AUHQ13825 339 aaKnown RBP24.62■■□□□ 1.53
LSM4-202ENST00000593564 EXOC3L4Q17RC7 722 aa24.62■■□□□ 1.53
LSM4-202ENST00000593564 CCDC157Q569K6 752 aa24.62■■□□□ 1.53
LSM4-202ENST00000593564 SLC45A4Q5BKX6 768 aa24.62■■□□□ 1.53
LSM4-202ENST00000593564 C19orf48Q6RUI8 117 aa24.62■■□□□ 1.53
LSM4-202ENST00000593564 DHRS13Q6UX07 377 aa24.62■■□□□ 1.53
LSM4-202ENST00000593564 C11orf57Q6ZUT1 292 aaPredicted RBP24.62■■□□□ 1.53
LSM4-202ENST00000593564 PASD1Q8IV76 773 aa24.62■■□□□ 1.53
LSM4-202ENST00000593564 OR8D1Q8WZ84 308 aa24.62■■□□□ 1.53
LSM4-202ENST00000593564 ADAMTS20P59510 1910 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 TBC1D3DA0A087WVF3 549 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 TBC1D3IA0A087WXS9 549 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 TBC1D3EA0A087X179 549 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 TBC1D3KA0A087X1G2 549 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 FAM149AA5PLN7 773 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 TBC1D3FA6NER0 549 aaPredicted RBP24.61■■□□□ 1.53
LSM4-202ENST00000593564 TRABD2BA6NFA1 517 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 TBC1D3LB9A6J9 549 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 TLR4O00206 839 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 ATP9BO43861 1147 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 GRAP2O75791 330 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 ITGAVP06756 1048 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 TBC1D3HP0C7X1 549 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 ARRB1P49407 418 aaPredicted RBP24.61■■□□□ 1.53
LSM4-202ENST00000593564 METAP1P53582 386 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 FAM46CQ5VWP2 391 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 TBC1D3GQ6DHY5 549 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 TBC1D3CQ6IPX1 549 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 NAPEPLDQ6IQ20 393 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 OLFML1Q6UWY5 402 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP24.61■■□□□ 1.53
LSM4-202ENST00000593564 FAM183BPQ6ZVS7 135 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 CREBRFQ8IUR6 639 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 TBC1D3Q8IZP1 549 aaPredicted RBP24.61■■□□□ 1.53
LSM4-202ENST00000593564 FEM1AQ9BSK4 669 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 ERVMER34-1Q9H9K5 563 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 SLC25A13Q9UJS0 675 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 VANGL2Q9ULK5 521 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 GTF3C3Q9Y5Q9 886 aa24.61■■□□□ 1.53
LSM4-202ENST00000593564 TP53BP1Q12888 1972 aaPredicted RBP24.6■■□□□ 1.53
LSM4-202ENST00000593564 KNTC1P50748 2209 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP24.6■■□□□ 1.53
LSM4-202ENST00000593564 ENC1O14682 589 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 DAB1O75553 588 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 PON1P27169 355 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 EPHA8P29322 1005 aaPredicted RBP24.6■■□□□ 1.53
LSM4-202ENST00000593564 NUDT1P36639 197 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 PTK2Q05397 1052 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 CYP4F3Q08477 520 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 ZNF177Q13360 481 aaPredicted RBP24.6■■□□□ 1.53
LSM4-202ENST00000593564 COL9A2Q14055 689 aaPredicted RBP24.6■■□□□ 1.53
LSM4-202ENST00000593564 COL28A1Q2UY09 1125 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 OR6B2Q6IFH4 312 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 SLC26A9Q7LBE3 791 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 PRPF39Q86UA1 669 aaKnown RBP24.6■■□□□ 1.53
LSM4-202ENST00000593564 TMPRSS12Q86WS5 348 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 OXR1Q8N573 874 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 PDCD7Q8N8D1 485 aaKnown RBP24.6■■□□□ 1.53
LSM4-202ENST00000593564 C1orf131Q8NDD1 294 aaKnown RBP24.6■■□□□ 1.53
LSM4-202ENST00000593564 OR52K2Q8NGK3 314 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 SCUBE2Q9NQ36 999 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 KIAA1468Q9P260 1216 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 ARHGAP20Q9P2F6 1191 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 SARDHQ9UL12 918 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 OR51B4Q9Y5P0 310 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 HS3ST4Q9Y661 456 aa24.6■■□□□ 1.53
LSM4-202ENST00000593564 URB1O60287 2271 aaKnown RBP24.59■■□□□ 1.53
LSM4-202ENST00000593564 FASNP49327 2511 aaKnown RBP24.59■■□□□ 1.53
LSM4-202ENST00000593564 E9PAM4 449 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 ALOX15BO15296 676 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 PLRG1O43660 514 aaKnown RBP24.59■■□□□ 1.53
LSM4-202ENST00000593564 RTN2O75298 545 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 CLDN11O75508 207 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 LDOC1O95751 146 aaPredicted RBP24.59■■□□□ 1.53
LSM4-202ENST00000593564 ERBB2P04626 1255 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 RXRGP48443 463 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 IRAK1P51617 712 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 SNX16P57768 344 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 NME3Q13232 169 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 C5orf22Q49AR2 442 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 ACCSLQ4AC99 568 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 IRF2BP1Q8IU81 584 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 MFSD2AQ8NA29 543 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 ZNF397Q8NF99 534 aaPredicted RBP24.59■■□□□ 1.53
LSM4-202ENST00000593564 CNDP2Q96KP4 475 aaKnown RBP24.59■■□□□ 1.53
LSM4-202ENST00000593564 PPM1HQ9ULR3 514 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 DMTF1Q9Y222 760 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 TBC1D30Q9Y2I9 924 aa24.59■■□□□ 1.53
LSM4-202ENST00000593564 C1QTNF3-AMACRE9PGA6 284 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 PLK4O00444 970 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 MCF2LO15068 1137 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 PAGE1O75459 146 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 C1SP09871 688 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 CDK4P11802 303 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 NOS2P35228 1153 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 SLC6A3Q01959 620 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 DLG2Q15700 870 aa24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms