RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 LRRC6Q86X45 466 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 NUDCD3Q8IVD9 361 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 E2F7Q96AV8 911 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 ERLEC1Q96DZ1 483 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 SEMA3CQ99985 751 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 TASP1Q9H6P5 420 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 RAD18Q9NS91 495 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 SLC39A10Q9ULF5 831 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 BACE2Q9Y5Z0 518 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 HNRNPA1P09651 372 aaKnown RBP eCLIP10.03□□□□□ -0.8
LIG3-216ENST00000593099 L1CAMP32004 1257 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 CSE1LP55060 971 aaKnown RBP10.03□□□□□ -0.8
LIG3-216ENST00000593099 MLLT1Q03111 559 aaPredicted RBP10.03□□□□□ -0.8
LIG3-216ENST00000593099 FAAP100Q0VG06 881 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 CHST9Q7L1S5 443 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 KCTD13Q8WZ19 329 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 TBL1YQ9BQ87 522 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 MLPHQ9BV36 600 aaPredicted RBP10.03□□□□□ -0.8
LIG3-216ENST00000593099 SUN2Q9UH99 717 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 AGO1Q9UL18 857 aaKnown RBP10.03□□□□□ -0.8
LIG3-216ENST00000593099 SSC5DA1L4H1 1573 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 RNF225M0QZC1 329 aaPredicted RBP10.03□□□□□ -0.8
LIG3-216ENST00000593099 CASQ2O14958 399 aaPredicted RBP10.03□□□□□ -0.8
LIG3-216ENST00000593099 MSH3P20585 1137 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 PROZP22891 400 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 SCNN1AP37088 669 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 CDH4P55283 916 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 DEFB103AP81534 67 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 UBXN11Q5T124 520 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 GLT6D1Q7Z4J2 308 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.03□□□□□ -0.8
LIG3-216ENST00000593099 ZBTB18Q99592 522 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 TRMT61BQ9BVS5 477 aaKnown RBP10.03□□□□□ -0.8
LIG3-216ENST00000593099 SLC4A5Q9BY07 1137 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 TRABDQ9H4I3 376 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.03□□□□□ -0.8
LIG3-216ENST00000593099 USH1CQ9Y6N9 552 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 E9PAM4 449 aa10.02□□□□□ -0.8
LIG3-216ENST00000593099 PTGESO14684 152 aa10.02□□□□□ -0.8
LIG3-216ENST00000593099 STBD1O95210 358 aa10.02□□□□□ -0.8
LIG3-216ENST00000593099 MAGOHP61326 146 aaKnown RBP10.02□□□□□ -0.8
LIG3-216ENST00000593099 CAP1Q01518 475 aa10.02□□□□□ -0.8
LIG3-216ENST00000593099 TXNDC8Q6A555 127 aa10.02□□□□□ -0.8
LIG3-216ENST00000593099 CHRDL2Q6WN34 429 aa10.02□□□□□ -0.8
LIG3-216ENST00000593099 TMCO2Q7Z6W1 182 aaPredicted RBP10.02□□□□□ -0.8
LIG3-216ENST00000593099 CELF5Q8N6W0 485 aaKnown RBP10.02□□□□□ -0.8
LIG3-216ENST00000593099 FBXO36Q8NEA4 188 aa10.02□□□□□ -0.8
LIG3-216ENST00000593099 TOP1MTQ969P6 601 aa10.02□□□□□ -0.8
LIG3-216ENST00000593099 FIZ1Q96SL8 496 aa10.02□□□□□ -0.8
LIG3-216ENST00000593099 HERC2P3Q9BVR0 1158 aa10.02□□□□□ -0.8
LIG3-216ENST00000593099 OSGEPL1Q9H4B0 414 aa10.02□□□□□ -0.8
LIG3-216ENST00000593099 NDRG2Q9UN36 371 aaKnown RBP10.02□□□□□ -0.8
LIG3-216ENST00000593099 hCG_1818297A0A087WSY0 165 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 C2CD4BA6NLJ0 364 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 MEIS3P2A8K0S8 358 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 EIF3HO15372 352 aaKnown RBP eCLIP10.02□□□□□ -0.81
LIG3-216ENST00000593099 MYO1DO94832 1006 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 GJA1P17302 382 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 TPH1P17752 444 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 GRSF1Q12849 480 aaKnown RBP eCLIP10.02□□□□□ -0.81
LIG3-216ENST00000593099 TMED1Q13445 227 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 GRM3Q14832 879 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 SETMARQ53H47 684 aaPredicted RBP10.02□□□□□ -0.81
LIG3-216ENST00000593099 ANKRD20A2Q5SQ80 823 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 ANKRD20A1Q5TYW2 823 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 NPNTQ6UXI9 565 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 RNF19BQ6ZMZ0 732 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 MTSS1LQ765P7 747 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 TRMT11Q7Z4G4 463 aaKnown RBP10.02□□□□□ -0.81
LIG3-216ENST00000593099 COLGALT2Q8IYK4 626 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 TMCO5AQ8N6Q1 288 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 SFXN1Q9H9B4 322 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 PNPLA8Q9NP80 782 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 CD274Q9NZQ7 290 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 PDE2AO00408 941 aaPredicted RBP10.02□□□□□ -0.81
LIG3-216ENST00000593099 TIMM44O43615 452 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 NBNO60934 754 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 LRCH4O75427 683 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 CHRNB2P17787 502 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 GDI1P31150 447 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 CD86P42081 329 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 DGKGP49619 791 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 CDK16Q00536 496 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 OCRLQ01968 901 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 AUHQ13825 339 aaKnown RBP10.02□□□□□ -0.81
LIG3-216ENST00000593099 CCDC157Q569K6 752 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 CLLU1OSQ5K130 101 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 CEP68Q76N32 757 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 RD3Q7Z3Z2 195 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 SPATA17Q96L03 361 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 SPATA16Q9BXB7 569 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 FAM96AQ9H5X1 160 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 BCAP29Q9UHQ4 241 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 FBXO10Q9UK96 956 aa10.02□□□□□ -0.81
LIG3-216ENST00000593099 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.02□□□□□ -0.81
LIG3-216ENST00000593099 NVLO15381 856 aaKnown RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 CTSAP10619 480 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 SLC8A1P32418 973 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 HADHAP40939 763 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 SERPINH1P50454 418 aaKnown RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms