RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 SPG21Q9NZD8 308 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 DNMT3LQ9UJW3 386 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 ATXN2Q99700 1313 aaKnown RBP14.5□□□□□ -0.09
LIG3-205ENST00000585941 A0A1W2PPM1 405 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 FOXO6A8MYZ6 492 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 KIAA0355O15063 1070 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 BAIAP3O94812 1187 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 VIMP08670 466 aaKnown RBP14.5□□□□□ -0.09
LIG3-205ENST00000585941 MGAT1P26572 445 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 ATP5C1P36542 298 aaKnown RBP14.5□□□□□ -0.09
LIG3-205ENST00000585941 PPP3CCP48454 512 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 SESN2P58004 480 aaPredicted RBP14.5□□□□□ -0.09
LIG3-205ENST00000585941 PPARDQ03181 441 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 ARMC3Q5W041 872 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 FOXR1Q6PIV2 292 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 C14orf80Q86SX3 495 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 PRPF39Q86UA1 669 aaKnown RBP14.5□□□□□ -0.09
LIG3-205ENST00000585941 MIB1Q86YT6 1006 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 CACNA2D3Q8IZS8 1091 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 TMEM199Q8N511 208 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 GIPC2Q8TF65 315 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 DEPDC1BQ8WUY9 529 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 FCRL5Q96RD9 977 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 CLSTN3Q9BQT9 956 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 RC3H2Q9HBD1 1191 aaKnown RBP14.5□□□□□ -0.09
LIG3-205ENST00000585941 PLAC1Q9HBJ0 212 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 VANGL2Q9ULK5 521 aa14.5□□□□□ -0.09
LIG3-205ENST00000585941 DRGXA6NNA5 263 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 ADAM12O43184 909 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 SPAG7O75391 227 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 NEBLO76041 1014 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 ASMTLO95671 621 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 PPM1AP35813 382 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 ALDH1A3P47895 512 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 CREMQ03060 361 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 DNAJC3Q13217 504 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 BTG3Q14201 252 aaPredicted RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 VEPH1Q14D04 833 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 LRRC14Q15048 493 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 SEPT7Q16181 437 aaKnown RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 FAM182AQ5T1J6 154 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 HHATQ5VTY9 493 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 MARK2Q7KZI7 788 aaKnown RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 DDX53Q86TM3 631 aaKnown RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 C4orf33Q8N1A6 199 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 DNAAF3Q8N9W5 541 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 ARNTL2Q8WYA1 636 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 TRMT2BQ96GJ1 504 aaKnown RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 MYRFLQ96LU7 910 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 IL22Q9GZX6 179 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 GLOD4Q9HC38 313 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 MAGED2Q9UNF1 606 aaPredicted RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 NYNRINQ9P2P1 1898 aaKnown RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 F5H423 210 aaPredicted RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 TBX18O95935 607 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 URODP06132 367 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 MAPKAPK2P49137 400 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 PAPOLAP51003 745 aaKnown RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 RENBPP51606 427 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 GEMP55040 296 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 YBEYP58557 167 aaPredicted RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 WDR5P61964 334 aaKnown RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 SLC18A2Q05940 514 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 CDH17Q12864 832 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 RAB33AQ14088 237 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 HNRNPDQ14103 355 aaKnown RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 CRYMQ14894 314 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 LRRC26Q2I0M4 334 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 HECTD3Q5T447 861 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 RGS9BPQ6ZS82 235 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 NECAB2Q7Z6G3 386 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 LRRC34Q8IZ02 419 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 CNTD1Q8N815 330 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 ANKS4BQ8N8V4 417 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 BANPQ8N9N5 519 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 OR52K1Q8NGK4 314 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 AZIN2Q96A70 460 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 PAWRQ96IZ0 340 aaKnown RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 SEC16BQ96JE7 1060 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 ZNF512Q96ME7 567 aaPredicted RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 GORASP1Q9BQQ3 440 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 MLPHQ9BV36 600 aaPredicted RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 KIF9Q9HAQ2 790 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.49□□□□□ -0.09
LIG3-205ENST00000585941 SYBUQ9NX95 663 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 MPP6Q9NZW5 540 aa14.49□□□□□ -0.09
LIG3-205ENST00000585941 IPO11Q9UI26 975 aaKnown RBP14.49□□□□□ -0.09
LIG3-205ENST00000585941 RAG1P15918 1043 aa14.48□□□□□ -0.09
LIG3-205ENST00000585941 RPL17P18621 184 aaKnown RBP14.48□□□□□ -0.09
LIG3-205ENST00000585941 RPA3P35244 121 aaPredicted RBP14.48□□□□□ -0.09
LIG3-205ENST00000585941 SLC11A2P49281 568 aa14.48□□□□□ -0.09
LIG3-205ENST00000585941 WDR4P57081 412 aaKnown RBP14.48□□□□□ -0.09
LIG3-205ENST00000585941 TAF12Q16514 161 aa14.48□□□□□ -0.09
LIG3-205ENST00000585941 PARP15Q460N3 678 aa14.48□□□□□ -0.09
LIG3-205ENST00000585941 YTHDF3Q7Z739 585 aaKnown RBP14.48□□□□□ -0.09
LIG3-205ENST00000585941 PIGWQ7Z7B1 504 aa14.48□□□□□ -0.09
LIG3-205ENST00000585941 CCDC117Q8IWD4 279 aaPredicted RBP14.48□□□□□ -0.09
LIG3-205ENST00000585941 GDAP1Q8TB36 358 aa14.48□□□□□ -0.09
LIG3-205ENST00000585941 NSMCE1Q8WV22 266 aa14.48□□□□□ -0.09
LIG3-205ENST00000585941 GRAMD1AQ96CP6 724 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms