RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	RAB6C	Q9H0N0	254 aa		13.7	□□□□□ -0.22
SREBF1-223	ENST00000584760	MTG2	Q9H4K7	406 aa		13.7	□□□□□ -0.22
SREBF1-223	ENST00000584760	ITM2C	Q9NQX7	267 aa		13.7	□□□□□ -0.22
SREBF1-223	ENST00000584760	SEPT11	Q9NVA2	429 aa	Known RBP	13.7	□□□□□ -0.22
SREBF1-223	ENST00000584760	PILRB	Q9UKJ0	227 aa		13.7	□□□□□ -0.22
SREBF1-223	ENST00000584760	SLC6A14	Q9UN76	642 aa		13.7	□□□□□ -0.22
SREBF1-223	ENST00000584760	TP53BP1	Q12888	1972 aa	Predicted RBP	13.7	□□□□□ -0.22
SREBF1-223	ENST00000584760	CACNA1E	Q15878	2313 aa		13.7	□□□□□ -0.22
SREBF1-223	ENST00000584760	CLDN11	O75508	207 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	CNTN5	O94779	1100 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	SERPINC1	P01008	464 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	SDC4	P31431	198 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	HOXD12	P35452	270 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	PBX1	P40424	430 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	STK19	P49842	368 aa	Predicted RBP	13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	CDH4	P55283	916 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	OXCT1	P55809	520 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	ST8SIA6	P61647	398 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	FANCC	Q00597	558 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	ECT2L	Q008S8	904 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	GFPT1	Q06210	699 aa	Predicted RBP	13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	ZNF33A	Q06730	810 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	CDO1	Q16878	200 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	C15orf59	Q2T9L4	293 aa	Predicted RBP	13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	FIGN	Q5HY92	759 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	ACBD5	Q5T8D3	534 aa	Predicted RBP	13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	C19orf48	Q6RUI8	117 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	STRADA	Q7RTN6	431 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	CENPI	Q92674	756 aa	Predicted RBP	13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	TOE1	Q96GM8	510 aa	Known RBP	13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	HSPA12B	Q96MM6	686 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	HAPLN3	Q96S86	360 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	RSPH9	Q9H1X1	276 aa	Predicted RBP	13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	WSB2	Q9NYS7	404 aa	Predicted RBP	13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	AIPL1	Q9NZN9	384 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	ZNF212	Q9UDV6	495 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	TBC1D30	Q9Y2I9	924 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	OR51B4	Q9Y5P0	310 aa		13.69	□□□□□ -0.22
SREBF1-223	ENST00000584760	PKD1L2	Q7Z442	2459 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	DRGX	A6NNA5	263 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	TTC34	A8MYJ7	566 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	UPK3BL1	B0FP48	263 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	UPK3BL2	E5RIL1	263 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760		E9PAM4	449 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	SIN3B	O75182	1162 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	TRIM16	O95361	564 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	KRT3	P12035	628 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	RFC1	P35251	1148 aa	Predicted RBP	13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	PRKCI	P41743	596 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	DPP6	P42658	865 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	NUMB	P49757	651 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	VASP	P50552	380 aa	Predicted RBP	13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	HDAC4	P56524	1084 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	RPS14	P62263	151 aa	Known RBP	13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	TPM4	P67936	248 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	SULT2A1	Q06520	285 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	ZNF177	Q13360	481 aa	Predicted RBP	13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	ASIC2	Q16515	512 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	DUOXA1	Q1HG43	343 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	PPP1R15B	Q5SWA1	713 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	C9orf64	Q5T6V5	341 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	OR2I1P	Q8NGU4	316 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	ZNF419	Q96HQ0	510 aa	Predicted RBP	13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	RPL10L	Q96L21	214 aa	Known RBP	13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	FEM1A	Q9BSK4	669 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	SELENOO	Q9BVL4	669 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	EDEM3	Q9BZQ6	932 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	TAS2R14	Q9NYV8	317 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	SUN2	Q9UH99	717 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	SLCO3A1	Q9UIG8	710 aa		13.68	□□□□□ -0.22
SREBF1-223	ENST00000584760	PLXNA2	O75051	1894 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	ASPM	Q8IZT6	3477 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	EDDM13	A0A1B0GTR0	161 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	TARSL2	A2RTX5	802 aa	Known RBP	13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	SIGLEC16	A6NMB1	481 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	OPHN1	O60890	802 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	NDUFS2	O75306	463 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	SERPINF2	P08697	491 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	ACADM	P11310	421 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	GPD1	P21695	349 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	RRM1	P23921	792 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	OXTR	P30559	389 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	NRG1	Q02297	640 aa	Predicted RBP	13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	ZBTB16	Q05516	673 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	MANEAL	Q5VSG8	457 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	SFMBT2	Q5VUG0	894 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	RNF219	Q5W0B1	726 aa	Predicted RBP	13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	ZNF776	Q68DI1	518 aa	Predicted RBP	13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	ACAD10	Q6JQN1	1059 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	DNAJC24	Q6P3W2	148 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	WDR59	Q6PJI9	974 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	ZNF571	Q7Z3V5	609 aa	Predicted RBP	13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	TFAP2D	Q7Z6R9	452 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	SETD3	Q86TU7	594 aa	Predicted RBP	13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	PROSER1	Q86XN7	944 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	MCOLN2	Q8IZK6	566 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	MINDY1	Q8N5J2	469 aa		13.67	□□□□□ -0.22
SREBF1-223	ENST00000584760	CEP76	Q8TAP6	659 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms