RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 MIIPQ5JXC2 388 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 LRSAM1Q6UWE0 723 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 ZDHHC17Q8IUH5 632 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 SKA1Q96BD8 255 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 TUBGCP2Q9BSJ2 902 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 RRN3Q9NYV6 651 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 TP53BP1Q12888 1972 aaPredicted RBP16.54■□□□□ 0.24
CLN3-229ENST00000567963 TBC1D3DA0A087WVF3 549 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 TBC1D3IA0A087WXS9 549 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 TBC1D3EA0A087X179 549 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 TBC1D3KA0A087X1G2 549 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 A0A1B0GTQ1 180 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 TBC1D3FA6NER0 549 aaPredicted RBP16.54■□□□□ 0.24
CLN3-229ENST00000567963 TBC1D3LB9A6J9 549 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 TNFSF14O43557 240 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 ATP9BO43861 1147 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 CLDN11O75508 207 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 TBC1D3HP0C7X1 549 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 PRKCSHP14314 528 aaPredicted RBP16.54■□□□□ 0.24
CLN3-229ENST00000567963 CD38P28907 300 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 METAP1P53582 386 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 SCAPQ12770 1279 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 KCNMA1Q12791 1236 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 DPCR1Q3MIW9 517 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 ACCSLQ4AC99 568 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 OTUD1Q5VV17 481 aaPredicted RBP16.54■□□□□ 0.24
CLN3-229ENST00000567963 TBC1D3GQ6DHY5 549 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 TBC1D3CQ6IPX1 549 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.54■□□□□ 0.24
CLN3-229ENST00000567963 TMPRSS7Q7RTY8 843 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 C14orf80Q86SX3 495 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 TBC1D3Q8IZP1 549 aaPredicted RBP16.54■□□□□ 0.24
CLN3-229ENST00000567963 NT5C3BQ969T7 300 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 FAM131CQ96AQ9 280 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 NPY6RQ99463 290 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 SIK2Q9H0K1 926 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 CLSTN2Q9H4D0 955 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 WDCPQ9H6R7 721 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 PIGVQ9NUD9 493 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 CHMP5Q9NZZ3 219 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 SLC25A13Q9UJS0 675 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 SARDHQ9UL12 918 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 TPX2Q9ULW0 747 aaKnown RBP16.54■□□□□ 0.24
CLN3-229ENST00000567963 TBC1D30Q9Y2I9 924 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 OR51B4Q9Y5P0 310 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 A0A1W2PR77 199 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 WNT9AO14904 365 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 TFE3P19532 575 aaPredicted RBP16.53■□□□□ 0.24
CLN3-229ENST00000567963 ERCC5P28715 1186 aaPredicted RBP16.53■□□□□ 0.24
CLN3-229ENST00000567963 CDH5P33151 784 aaPredicted RBP16.53■□□□□ 0.24
CLN3-229ENST00000567963 GGCXP38435 758 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 CXCR3P49682 368 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 CDH4P55283 916 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 RNASE9P60153 205 aaKnown RBP16.53■□□□□ 0.24
CLN3-229ENST00000567963 IL9RQ01113 521 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 DRAP1Q14919 205 aaPredicted RBP16.53■□□□□ 0.24
CLN3-229ENST00000567963 DLG2Q15700 870 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 HSP90AA4PQ58FG1 418 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 PRAMEF14Q5SWL7 426 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 PROSER1Q86XN7 944 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 TMEM35BQ8NCS4 154 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 OR8D1Q8WZ84 308 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 ELF4Q99607 663 aaPredicted RBP16.53■□□□□ 0.24
CLN3-229ENST00000567963 TKTL2Q9H0I9 626 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 KDM4CQ9H3R0 1056 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 ANLNQ9NQW6 1124 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 AASDHPPTQ9NRN7 309 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 ARHGEF38Q9NXL2 777 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.53■□□□□ 0.24
CLN3-229ENST00000567963 VPS28Q9UK41 221 aa16.53■□□□□ 0.24
CLN3-229ENST00000567963 CELSR3Q9NYQ7 3312 aa16.52■□□□□ 0.24
CLN3-229ENST00000567963 GOLGA8CPA6NN73 597 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 MCF2LO15068 1137 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 LATO43561 262 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 ADCY5O95622 1261 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 CYP11B1P15538 503 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 GABRB2P47870 512 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 RAPGEF1Q13905 1077 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 BRMS1LQ5PSV4 323 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 KLHDC7AQ5VTJ3 777 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 FAM46CQ5VWP2 391 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 DSG4Q86SJ6 1040 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 SH2D3CQ8N5H7 860 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 C18orf8Q96DM3 657 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 PGAP3Q96FM1 320 aaPredicted RBP16.52■□□□□ 0.23
CLN3-229ENST00000567963 SERAC1Q96JX3 654 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 PDCL3Q9H2J4 239 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 ARHGAP20Q9P2F6 1191 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 PPM1HQ9ULR3 514 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 STAP1Q9ULZ2 295 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 FHOD1Q9Y613 1164 aa16.52■□□□□ 0.23
CLN3-229ENST00000567963 DSPP15924 2871 aaKnown RBP16.52■□□□□ 0.23
CLN3-229ENST00000567963 I6L893 689 aaPredicted RBP16.51■□□□□ 0.23
CLN3-229ENST00000567963 PLK4O00444 970 aa16.51■□□□□ 0.23
CLN3-229ENST00000567963 SLC7A4O43246 635 aa16.51■□□□□ 0.23
CLN3-229ENST00000567963 PLRG1O43660 514 aaKnown RBP16.51■□□□□ 0.23
CLN3-229ENST00000567963 RTN2O75298 545 aa16.51■□□□□ 0.23
CLN3-229ENST00000567963 CNTN5O94779 1100 aa16.51■□□□□ 0.23
CLN3-229ENST00000567963 PPP2CBP62714 309 aa16.51■□□□□ 0.23
CLN3-229ENST00000567963 PPP2CAP67775 309 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms