RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CES5AQ6NT32 575 aa31.31■■■□□ 2.6
CTCF-203ENST00000566078 ZDHHC24Q6UX98 284 aa31.31■■■□□ 2.6
CTCF-203ENST00000566078 CELF5Q8N6W0 485 aaKnown RBP31.31■■■□□ 2.6
CTCF-203ENST00000566078 TSGA13Q96PP4 275 aa31.31■■■□□ 2.6
CTCF-203ENST00000566078 CEP41Q9BYV8 373 aa31.31■■■□□ 2.6
CTCF-203ENST00000566078 A0A0A0MRY4 1105 aa31.3■■■□□ 2.6
CTCF-203ENST00000566078 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP31.3■■■□□ 2.6
CTCF-203ENST00000566078 GCATO75600 419 aa31.3■■■□□ 2.6
CTCF-203ENST00000566078 POU3F3P20264 500 aaPredicted RBP31.3■■■□□ 2.6
CTCF-203ENST00000566078 CCNCP24863 283 aa31.3■■■□□ 2.6
CTCF-203ENST00000566078 ITGA8P53708 1063 aa31.3■■■□□ 2.6
CTCF-203ENST00000566078 YBEYP58557 167 aaPredicted RBP31.3■■■□□ 2.6
CTCF-203ENST00000566078 WASHC5Q12768 1159 aa31.3■■■□□ 2.6
CTCF-203ENST00000566078 ZNF177Q13360 481 aaPredicted RBP31.3■■■□□ 2.6
CTCF-203ENST00000566078 C6orf118Q5T5N4 469 aa31.3■■■□□ 2.6
CTCF-203ENST00000566078 ZNF354CQ86Y25 554 aa31.3■■■□□ 2.6
CTCF-203ENST00000566078 LRRC49Q8IUZ0 686 aa31.3■■■□□ 2.6
CTCF-203ENST00000566078 MICALL1Q8N3F8 863 aa31.3■■■□□ 2.6
CTCF-203ENST00000566078 BBOF1Q8ND07 529 aa31.3■■■□□ 2.6
CTCF-203ENST00000566078 FAM161BQ96MY7 647 aa31.3■■■□□ 2.6
CTCF-203ENST00000566078 SPATA13Q96N96 652 aa31.3■■■□□ 2.6
CTCF-203ENST00000566078 ZDHHC18Q9NUE0 388 aa31.3■■■□□ 2.6
CTCF-203ENST00000566078 MTSS1O43312 755 aa31.29■■■□□ 2.6
CTCF-203ENST00000566078 MAFKO60675 156 aa31.29■■■□□ 2.6
CTCF-203ENST00000566078 RHOCP08134 193 aa31.29■■■□□ 2.6
CTCF-203ENST00000566078 ANKRD20A2Q5SQ80 823 aa31.29■■■□□ 2.6
CTCF-203ENST00000566078 ATAT1Q5SQI0 421 aa31.29■■■□□ 2.6
CTCF-203ENST00000566078 ANKRD20A1Q5TYW2 823 aa31.29■■■□□ 2.6
CTCF-203ENST00000566078 ANKRD20A3Q5VUR7 823 aa31.29■■■□□ 2.6
CTCF-203ENST00000566078 TPGS1Q6ZTW0 290 aa31.29■■■□□ 2.6
CTCF-203ENST00000566078 CARNMT1Q8N4J0 409 aa31.29■■■□□ 2.6
CTCF-203ENST00000566078 FBXO25Q8TCJ0 367 aa31.29■■■□□ 2.6
CTCF-203ENST00000566078 AENQ8WTP8 325 aaKnown RBP31.29■■■□□ 2.6
CTCF-203ENST00000566078 DDI1Q8WTU0 396 aa31.29■■■□□ 2.6
CTCF-203ENST00000566078 ART4Q93070 314 aa31.29■■■□□ 2.6
CTCF-203ENST00000566078 BHMTQ93088 406 aa31.29■■■□□ 2.6
CTCF-203ENST00000566078 S1PR5Q9H228 398 aa31.29■■■□□ 2.6
CTCF-203ENST00000566078 IPO11Q9UI26 975 aaKnown RBP31.29■■■□□ 2.6
CTCF-203ENST00000566078 PTPN3P26045 913 aa31.28■■■□□ 2.6
CTCF-203ENST00000566078 MPPE1Q53F39 396 aa31.28■■■□□ 2.6
CTCF-203ENST00000566078 FAM78AQ5JUQ0 283 aa31.28■■■□□ 2.6
CTCF-203ENST00000566078 TIGD7Q6NT04 549 aaPredicted RBP31.28■■■□□ 2.6
CTCF-203ENST00000566078 ARHGEF18Q6ZSZ5 1173 aa31.28■■■□□ 2.6
CTCF-203ENST00000566078 GDE1Q9NZC3 331 aa31.28■■■□□ 2.6
CTCF-203ENST00000566078 ANAPC5Q9UJX4 755 aa31.28■■■□□ 2.6
CTCF-203ENST00000566078 TPX2Q9ULW0 747 aaKnown RBP31.28■■■□□ 2.6
CTCF-203ENST00000566078 C5orf42Q9H799 3197 aa31.28■■■□□ 2.6
CTCF-203ENST00000566078 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP31.27■■■□□ 2.6
CTCF-203ENST00000566078 LUC7L3O95232 432 aaKnown RBP31.27■■■□□ 2.6
CTCF-203ENST00000566078 ACVRL1P37023 503 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 GNA12Q03113 381 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 SETD3Q86TU7 594 aaPredicted RBP31.27■■■□□ 2.6
CTCF-203ENST00000566078 ZNF567Q8N184 647 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 OR52K2Q8NGK3 314 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 HNRNPLLQ8WVV9 542 aaKnown RBP31.27■■■□□ 2.6
CTCF-203ENST00000566078 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP31.27■■■□□ 2.6
CTCF-203ENST00000566078 ARHGEF2Q92974 986 aaKnown RBP31.27■■■□□ 2.6
CTCF-203ENST00000566078 ASB16Q96NS5 453 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 TBC1D14Q9P2M4 693 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 TBC1D30Q9Y2I9 924 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP31.27■■■□□ 2.6
CTCF-203ENST00000566078 H0Y626 953 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 BASP1P80723 227 aaKnown RBP31.27■■■□□ 2.6
CTCF-203ENST00000566078 ZBTB17Q13105 803 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 CXorf57Q6NSI4 855 aaKnown RBP31.27■■■□□ 2.6
CTCF-203ENST00000566078 C4orf22Q6V702 233 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 SMARCD2Q92925 531 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 LRCH3Q96II8 777 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 FMO2Q99518 471 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 FAM129AQ9BZQ8 928 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 MAGEH1Q9H213 219 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 SP110Q9HB58 689 aa31.27■■■□□ 2.6
CTCF-203ENST00000566078 KLHL8Q9P2G9 620 aaPredicted RBP31.27■■■□□ 2.6
CTCF-203ENST00000566078 TP73O15350 636 aa31.26■■■□□ 2.59
CTCF-203ENST00000566078 OPHN1O60890 802 aa31.26■■■□□ 2.59
CTCF-203ENST00000566078 CYBBP04839 570 aa31.26■■■□□ 2.59
CTCF-203ENST00000566078 VIPR2P41587 438 aa31.26■■■□□ 2.59
CTCF-203ENST00000566078 SERINC3Q13530 473 aa31.26■■■□□ 2.59
CTCF-203ENST00000566078 RNASEH2BQ5TBB1 312 aaKnown RBP31.26■■■□□ 2.59
CTCF-203ENST00000566078 HIBCHQ6NVY1 386 aaPredicted RBP31.26■■■□□ 2.59
CTCF-203ENST00000566078 RSPRY1Q96DX4 576 aa31.26■■■□□ 2.59
CTCF-203ENST00000566078 GAS2L1Q99501 681 aaPredicted RBP31.26■■■□□ 2.59
CTCF-203ENST00000566078 WNT6Q9Y6F9 365 aa31.26■■■□□ 2.59
CTCF-203ENST00000566078 BRWD1Q9NSI6 2320 aa31.26■■■□□ 2.59
CTCF-203ENST00000566078 A0A0D9SEW6 157 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 ILVBLA1L0T0 632 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 NDC80O14777 642 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 MATN3O15232 486 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 FAM153BP0C7A2 387 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 HOXD9P28356 352 aaPredicted RBP31.25■■■□□ 2.59
CTCF-203ENST00000566078 LTBRP36941 435 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 CAV1Q03135 178 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 CDH18Q13634 790 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 FAM153CQ494X1 144 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 PCGF5Q86SE9 256 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 OR7D4Q8NG98 312 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 USP33Q8TEY7 942 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 RIPOR3Q96MK2 946 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 ARFGAP3Q9NP61 516 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 RAB6BQ9NRW1 208 aa31.25■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms