RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CNTN1Q12860 1018 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 CLN3Q13286 438 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 CDKN3Q16667 212 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 LINC00303Q3SY05 128 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 ACCSLQ4AC99 568 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 ZNF542PQ5EBM4 170 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 C1orf220Q5T0J3 134 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 NADSYN1Q6IA69 706 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 CRTC1Q6UUV9 634 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 XKR5Q6UX68 686 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 RBM44Q6ZP01 1051 aaKnown RBP7.56□□□□□ -1.2
VPS4A-203ENST00000564399 APCDD1Q8J025 514 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 WDR36Q8NI36 951 aaKnown RBP7.56□□□□□ -1.2
VPS4A-203ENST00000564399 OR8D1Q8WZ84 308 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 EXTL1Q92935 676 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 ARRDC3Q96B67 414 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 GRAMD1AQ96CP6 724 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 PRICKLE1Q96MT3 831 aaPredicted RBP7.56□□□□□ -1.2
VPS4A-203ENST00000564399 SPAG5Q96R06 1193 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 DUSP23Q9BVJ7 150 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 CAAP1Q9H8G2 361 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 MAGEF1Q9HAY2 307 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 USP29Q9HBJ7 922 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 CISHQ9NSE2 258 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 DNAJC28Q9NX36 388 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 ANKMY1Q9P2S6 941 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 SEPT3Q9UH03 358 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 TSPAN16Q9UKR8 245 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 PCDHGA8Q9Y5G5 932 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 ENTPD2Q9Y5L3 495 aa7.56□□□□□ -1.2
VPS4A-203ENST00000564399 MORC2Q9Y6X9 1032 aaPredicted RBP7.56□□□□□ -1.2
VPS4A-203ENST00000564399 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.55□□□□□ -1.2
VPS4A-203ENST00000564399 LY6G6EA0A0G2JKS1 128 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 A0A1W2PQU0 124 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 PMS2P1A4D2B8 440 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 CDRT15L2A8MXV6 281 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 C1QTNF3-AMACRE9PGA6 284 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 PIK3R2O00459 728 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 PDXKO00764 312 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 SCAMP1O15126 338 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 SUV39H1O43463 412 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 CALUO43852 315 aaPredicted RBP7.55□□□□□ -1.2
VPS4A-203ENST00000564399 BNIP3LO60238 219 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 MOCS2O96007 188 aaPredicted RBP7.55□□□□□ -1.2
VPS4A-203ENST00000564399 IGLV3-27P01718 113 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 AFPP02771 609 aaKnown RBP7.55□□□□□ -1.2
VPS4A-203ENST00000564399 GIMD1P0DJR0 217 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 PDIA4P13667 645 aaKnown RBP7.55□□□□□ -1.2
VPS4A-203ENST00000564399 SYT1P21579 422 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 AKT2P31751 481 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 INHBCP55103 352 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 DAOAP59103 153 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 HNRNPKP61978 463 aaKnown RBP eCLIP7.55□□□□□ -1.2
VPS4A-203ENST00000564399 NUCB2P80303 420 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 SKOR1P84550 965 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 PPP3CAQ08209 521 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 BST2Q10589 180 aaKnown RBP7.55□□□□□ -1.2
VPS4A-203ENST00000564399 STK4Q13043 487 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 ZNF177Q13360 481 aaPredicted RBP7.55□□□□□ -1.2
VPS4A-203ENST00000564399 CUL4BQ13620 913 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 DCAF6Q58WW2 860 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 MS4A13Q5J8X5 152 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 AGBL4Q5VU57 503 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 MSANTD2Q6P1R3 559 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 INTS8Q75QN2 995 aaKnown RBP7.55□□□□□ -1.2
VPS4A-203ENST00000564399 EFL1Q7Z2Z2 1120 aaKnown RBP7.55□□□□□ -1.2
VPS4A-203ENST00000564399 JAMLQ86YT9 394 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 LGI2Q8N0V4 545 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 LINC00301Q8NCQ3 95 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 OR13H1Q8NG92 308 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 TPCN2Q8NHX9 752 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 UBA3Q8TBC4 463 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 AZIN2Q96A70 460 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 SGF29Q96ES7 293 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 MYEOVQ96EZ4 313 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 PRR11Q96HE9 360 aaPredicted RBP7.55□□□□□ -1.2
VPS4A-203ENST00000564399 NUCKS1Q9H1E3 243 aaKnown RBP7.55□□□□□ -1.2
VPS4A-203ENST00000564399 SYNDIG1Q9H7V2 258 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 PREBQ9HCU5 417 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 FZD3Q9NPG1 666 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 CNGB3Q9NQW8 809 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 STARD5Q9NSY2 213 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 EXOC1Q9NV70 894 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 TJP2Q9UDY2 1190 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 SARDHQ9UL12 918 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 ATXN7L1Q9ULK2 861 aaPredicted RBP7.55□□□□□ -1.2
VPS4A-203ENST00000564399 U3KQA8 63 aa7.55□□□□□ -1.2
VPS4A-203ENST00000564399 CCDC187A0A096LP49 1063 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 EFSO43281 561 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 LZTS3O60299 673 aaPredicted RBP7.54□□□□□ -1.2
VPS4A-203ENST00000564399 CUTAO60888 179 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 PCDH8O95206 1070 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 LTFP02788 710 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 FAM87AP0C7U9 286 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 SFTPCP11686 197 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 GP1BBP13224 206 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 PDGFRAP16234 1089 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 HNRNPA2B1P22626 353 aaKnown RBP7.54□□□□□ -1.2
VPS4A-203ENST00000564399 MLLT3P42568 568 aaPredicted RBP7.54□□□□□ -1.2
VPS4A-203ENST00000564399 NASPP49321 788 aaPredicted RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms