RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TRMT1Q9NXH9 659 aaKnown RBP22.33■■□□□ 1.17
SNX1-210ENST00000560260 NYNRINQ9P2P1 1898 aaKnown RBP22.33■■□□□ 1.16
SNX1-210ENST00000560260 NCAM2O15394 837 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 DAPK3O43293 454 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 SNAP91O60641 907 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 PEX5P50542 639 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 OXCT1P55809 520 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 DMC1Q14565 340 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 ZFYVE27Q5T4F4 411 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 AFMIDQ63HM1 303 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 ZNF783Q6ZMS7 281 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 PEX26Q7Z412 305 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 SYCE1Q8N0S2 351 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 UMODL1-AS1Q8N2C9 162 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 PQLC3Q8N755 202 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 ZNF513Q8N8E2 541 aaPredicted RBP22.32■■□□□ 1.16
SNX1-210ENST00000560260 ALG3Q92685 438 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 ARHGEF2Q92974 986 aaKnown RBP22.32■■□□□ 1.16
SNX1-210ENST00000560260 RNF25Q96BH1 459 aaPredicted RBP22.32■■□□□ 1.16
SNX1-210ENST00000560260 MYO19Q96H55 970 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 CELF6Q96J87 481 aaKnown RBP22.32■■□□□ 1.16
SNX1-210ENST00000560260 MRGPRX3Q96LB0 322 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 LRRC19Q9H756 370 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 DDX56Q9NY93 547 aaKnown RBP22.32■■□□□ 1.16
SNX1-210ENST00000560260 THAP10Q9P2Z0 257 aaPredicted RBP22.32■■□□□ 1.16
SNX1-210ENST00000560260 VPS51Q9UID3 782 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 VPS28Q9UK41 221 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 AMFRQ9UKV5 643 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 PCDHA3Q9Y5H8 950 aa22.32■■□□□ 1.16
SNX1-210ENST00000560260 CHURC1-FNTBB4DL54 471 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 DDX3YO15523 660 aaKnown RBP22.31■■□□□ 1.16
SNX1-210ENST00000560260 RAMP2O60895 175 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 ADAM23O75077 832 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 KLF8O95600 359 aaPredicted RBP22.31■■□□□ 1.16
SNX1-210ENST00000560260 HNRNPLP14866 589 aaKnown RBP eCLIP22.31■■□□□ 1.16
SNX1-210ENST00000560260 POLR2EP19388 210 aaKnown RBP22.31■■□□□ 1.16
SNX1-210ENST00000560260 WASP42768 502 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 MRPS21P82921 87 aaKnown RBP22.31■■□□□ 1.16
SNX1-210ENST00000560260 MTAPQ13126 283 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 ZNF234Q14588 700 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 TAZQ16635 292 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 ANKRD20A8PQ5CZ79 823 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 NCBP2-AS2Q69YL0 99 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 CCDC33Q8N5R6 958 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 DCAF4L2Q8NA75 395 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 HMCESQ96FZ2 354 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 ACE2Q9BYF1 805 aaPredicted RBP22.31■■□□□ 1.16
SNX1-210ENST00000560260 CACNA2D2Q9NY47 1150 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 MYO18AQ92614 2054 aaKnown RBP22.31■■□□□ 1.16
SNX1-210ENST00000560260 RASA4BC9J798 803 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 SGK1O00141 431 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 RASA4O43374 803 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 ZMPSTE24O75844 475 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 DLDP09622 509 aaKnown RBP22.31■■□□□ 1.16
SNX1-210ENST00000560260 AVPR2P30518 371 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 IL12RB1P42701 662 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 STK19P49842 368 aaPredicted RBP22.31■■□□□ 1.16
SNX1-210ENST00000560260 NUDT18Q6ZVK8 323 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 TXNDC5Q8NBS9 432 aaKnown RBP22.31■■□□□ 1.16
SNX1-210ENST00000560260 LRFN3Q9BTN0 628 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 C1QTNF1Q9BXJ1 281 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 SLC39A8Q9C0K1 460 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 ATP13A1Q9HD20 1204 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 ERVW-1Q9UQF0 538 aa22.31■■□□□ 1.16
SNX1-210ENST00000560260 CCDC66A2RUB6 948 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 ZNF487B1APH4 448 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 WASH3PC4AMC7 463 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 ZSCAN12O43309 604 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 MFSD11O43934 449 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 PRKCHP24723 683 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 CDKN2BP42772 138 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 MAGEA9P43362 315 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 ARF5P84085 180 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 ENPP2Q13822 863 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 LLGL1Q15334 1064 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 SPOCD1Q6ZMY3 1216 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 MAP7D3Q8IWC1 876 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 UCMAQ8WVF2 138 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 HES6Q96HZ4 224 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 RPL10LQ96L21 214 aaKnown RBP22.3■■□□□ 1.16
SNX1-210ENST00000560260 RNF157Q96PX1 679 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 HERPUD2Q9BSE4 406 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 SPON2Q9BUD6 331 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 MAGEH1Q9H213 219 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 MMP17Q9ULZ9 603 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 ACTL7AQ9Y615 435 aa22.3■■□□□ 1.16
SNX1-210ENST00000560260 TIMM44O43615 452 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 ASLP04424 464 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 COL9A1P20849 921 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 DNA2P51530 1060 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 NDST2P52849 883 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 YBEYP58557 167 aaPredicted RBP22.29■■□□□ 1.16
SNX1-210ENST00000560260 ECT2LQ008S8 904 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 POLD3Q15054 466 aaPredicted RBP22.29■■□□□ 1.16
SNX1-210ENST00000560260 DCAF12L1Q5VU92 463 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 AADACL2Q6P093 401 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 TMCO3Q6UWJ1 677 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 LINGO4Q6UY18 593 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 VSIG1Q86XK7 387 aa22.29■■□□□ 1.16
SNX1-210ENST00000560260 CHPFQ8IZ52 775 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms