RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 RNF43Q68DV7 783 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 CCNI2Q6ZMN8 369 aaPredicted RBP12.48□□□□□ -0.41
HERC1-205ENST00000559886 ARHGAP36Q6ZRI8 547 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 CCDC13Q8IYE1 715 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 MICALL1Q8N3F8 863 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 EIF1ADQ8N9N8 165 aaKnown RBP12.48□□□□□ -0.41
HERC1-205ENST00000559886 SMRP1Q8NCR6 262 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 DEPDC1BQ8WUY9 529 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 MAGEH1Q9H213 219 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 FAM114A2Q9NRY5 505 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 EYSQ5T1H1 3165 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 ILVBLA1L0T0 632 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 SLC9A3R1O14745 358 aaPredicted RBP12.48□□□□□ -0.41
HERC1-205ENST00000559886 CARSP49589 748 aaKnown RBP12.48□□□□□ -0.41
HERC1-205ENST00000559886 VPS41P49754 854 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 GNA12Q03113 381 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 WASHC5Q12768 1159 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 CXorf57Q6NSI4 855 aaKnown RBP12.48□□□□□ -0.41
HERC1-205ENST00000559886 OR52K2Q8NGK3 314 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 DDI1Q8WTU0 396 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 IFT81Q8WYA0 676 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 SNF8Q96H20 258 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 LINC00597Q9H2U6 94 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 OBP2AQ9NY56 170 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 GRHL1Q9NZI5 618 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 WHRNQ9P202 907 aa12.48□□□□□ -0.41
HERC1-205ENST00000559886 KCNK1O00180 336 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 DYNC1I1O14576 645 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 LUC7L3O95232 432 aaKnown RBP12.47□□□□□ -0.41
HERC1-205ENST00000559886 FCARP24071 287 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 HOXD9P28356 352 aaPredicted RBP12.47□□□□□ -0.41
HERC1-205ENST00000559886 ACTN2P35609 894 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 GPS1Q13098 491 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 SERINC3Q13530 473 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 FYB2Q5VWT5 728 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 ZNF783Q6ZMS7 281 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 TPGS1Q6ZTW0 290 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 ADGRG2Q8IZP9 1017 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 ARHGEF2Q92974 986 aaKnown RBP12.47□□□□□ -0.41
HERC1-205ENST00000559886 FATE1Q969F0 183 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 MYADMQ96S97 322 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 IPO11Q9UI26 975 aaKnown RBP12.47□□□□□ -0.41
HERC1-205ENST00000559886 WNT6Q9Y6F9 365 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 A0A0A0MRY4 1105 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 A0A0D9SEW6 157 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 RNF103O00237 685 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 STK10O94804 968 aaKnown RBP12.47□□□□□ -0.41
HERC1-205ENST00000559886 SEC31AO94979 1220 aaKnown RBP12.47□□□□□ -0.41
HERC1-205ENST00000559886 CYBBP04839 570 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 RHOCP08134 193 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 ITIH2P19823 946 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 CLCN6P51797 869 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 TIGD7Q6NT04 549 aaPredicted RBP12.47□□□□□ -0.41
HERC1-205ENST00000559886 GPR153Q6NV75 609 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 C4orf22Q6V702 233 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 TMEM25Q86YD3 366 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 CARNMT1Q8N4J0 409 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 CCDC110Q8TBZ0 833 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 BPIFB1Q8TDL5 484 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 IRF7Q92985 503 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 LRRC45Q96CN5 670 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 SPATA13Q96N96 652 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 NECTIN4Q96NY8 510 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 POMKQ9H5K3 350 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 PAK5Q9P286 719 aa12.47□□□□□ -0.41
HERC1-205ENST00000559886 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.46□□□□□ -0.41
HERC1-205ENST00000559886 CCDC151A5D8V7 595 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 H0Y626 953 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 MATN3O15232 486 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 TP73O15350 636 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 MYBL2P10244 700 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 PTPN3P26045 913 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 ECHS1P30084 290 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 ACVRL1P37023 503 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 BRD3Q15059 726 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 FSCBQ5H9T9 825 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 ANKRD20A2Q5SQ80 823 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 ANKRD20A1Q5TYW2 823 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 ANKRD20A3Q5VUR7 823 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 OSCP1Q8WVF1 389 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 SUSD6Q92537 303 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 BHMTQ93088 406 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 VAT1Q99536 393 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 ZFP14Q9HCL3 533 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 SPHK2Q9NRA0 654 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 SEPT10Q9P0V9 454 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 CD207Q9UJ71 328 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 NFU1Q9UMS0 254 aa12.46□□□□□ -0.41
HERC1-205ENST00000559886 SPTBN5Q9NRC6 3674 aaKnown RBP12.46□□□□□ -0.42
HERC1-205ENST00000559886 HEPACAM2A8MVW5 462 aa12.46□□□□□ -0.42
HERC1-205ENST00000559886 OPHN1O60890 802 aa12.46□□□□□ -0.42
HERC1-205ENST00000559886 PENKP01210 267 aaPredicted RBP12.46□□□□□ -0.42
HERC1-205ENST00000559886 LAMP2P13473 410 aa12.46□□□□□ -0.42
HERC1-205ENST00000559886 CCNB1P14635 433 aa12.46□□□□□ -0.42
HERC1-205ENST00000559886 H2AFXP16104 143 aaPredicted RBP12.46□□□□□ -0.42
HERC1-205ENST00000559886 ETFBP38117 255 aa12.46□□□□□ -0.42
HERC1-205ENST00000559886 IFI35P80217 286 aaPredicted RBP12.46□□□□□ -0.42
HERC1-205ENST00000559886 CALCOCO2Q13137 446 aa12.46□□□□□ -0.42
HERC1-205ENST00000559886 CDH18Q13634 790 aa12.46□□□□□ -0.42
HERC1-205ENST00000559886 TEX44Q53QW1 395 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms