RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 SFMBT1Q9UHJ3 866 aa12.6□□□□□ -0.39
LDLR-205ENST00000557933 ZDHHC2Q9UIJ5 367 aa12.6□□□□□ -0.39
LDLR-205ENST00000557933 SOWAHBA6NEL2 793 aa12.6□□□□□ -0.39
LDLR-205ENST00000557933 PLOD2O00469 737 aa12.6□□□□□ -0.39
LDLR-205ENST00000557933 NDC80O14777 642 aa12.6□□□□□ -0.39
LDLR-205ENST00000557933 RNASEH2AO75792 299 aaKnown RBP12.6□□□□□ -0.39
LDLR-205ENST00000557933 NDUFV1P49821 464 aa12.6□□□□□ -0.39
LDLR-205ENST00000557933 HNRNPDQ14103 355 aaKnown RBP12.6□□□□□ -0.39
LDLR-205ENST00000557933 SURF1Q15526 300 aa12.6□□□□□ -0.39
LDLR-205ENST00000557933 ARL13AQ5H913 290 aaPredicted RBP12.6□□□□□ -0.39
LDLR-205ENST00000557933 FAM91A1Q658Y4 838 aa12.6□□□□□ -0.39
LDLR-205ENST00000557933 KCTD4Q8WVF5 259 aa12.6□□□□□ -0.39
LDLR-205ENST00000557933 LENG1Q96BZ8 264 aaPredicted RBP12.6□□□□□ -0.39
LDLR-205ENST00000557933 C1orf21Q9H246 121 aa12.6□□□□□ -0.39
LDLR-205ENST00000557933 KLHL8Q9P2G9 620 aaPredicted RBP12.6□□□□□ -0.39
LDLR-205ENST00000557933 TUBGCP4Q9UGJ1 667 aa12.6□□□□□ -0.39
LDLR-205ENST00000557933 BCLAF3A2AJT9 711 aaKnown RBP12.59□□□□□ -0.39
LDLR-205ENST00000557933 FAM72CH0Y354 149 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 CLDN5O00501 218 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 BIRC5O15392 142 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 C2P06681 752 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 CKMT2P17540 419 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 ACAT1P24752 427 aaKnown RBP12.59□□□□□ -0.39
LDLR-205ENST00000557933 SLC5A2P31639 672 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 PABPC1LQ4VXU2 614 aaKnown RBP12.59□□□□□ -0.39
LDLR-205ENST00000557933 BOLA3Q53S33 107 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 FAM72AQ5TYM5 149 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 FAM72DQ6L9T8 149 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 FAM72BQ86X60 149 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 CDKL3Q8IVW4 592 aaPredicted RBP12.59□□□□□ -0.39
LDLR-205ENST00000557933 EME1Q96AY2 570 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 SPATA33Q96N06 139 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 CIB1Q99828 191 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 NT5C1AQ9BXI3 368 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 GBA2Q9HCG7 927 aaPredicted RBP12.59□□□□□ -0.39
LDLR-205ENST00000557933 ATXN10Q9UBB4 475 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 ITGA11Q9UKX5 1188 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 MTF2Q9Y483 593 aaPredicted RBP12.59□□□□□ -0.39
LDLR-205ENST00000557933 SCN1AP35498 2009 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.59□□□□□ -0.39
LDLR-205ENST00000557933 FAM149AA5PLN7 773 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 DDNO94850 711 aaPredicted RBP12.59□□□□□ -0.39
LDLR-205ENST00000557933 EFNA5P52803 228 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 GHRHRQ02643 423 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 TMEM132DQ14C87 1099 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 PPP1R2P3Q6NXS1 205 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 ZNF567Q8N184 647 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 OR9I1Q8NGQ6 314 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 SEPT1Q8WYJ6 367 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 LRTOMTQ8WZ04 291 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 CERS2Q96G23 380 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 CELF6Q96J87 481 aaKnown RBP12.59□□□□□ -0.39
LDLR-205ENST00000557933 CDH19Q9H159 772 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 SNX13Q9Y5W8 968 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 RLFQ13129 1914 aa12.59□□□□□ -0.39
LDLR-205ENST00000557933 KCNU1A8MYU2 1149 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 ACKR2O00590 384 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 B4GALT4O60513 344 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 ZNF286BP0CG31 522 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 VDRP11473 427 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 ARF4P18085 180 aaPredicted RBP12.58□□□□□ -0.39
LDLR-205ENST00000557933 MAGEA3P43357 314 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 GRIA4P48058 902 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 SLC6A3Q01959 620 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 NIPAL4Q0D2K0 466 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 CTBP1Q13363 440 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 ART3Q13508 389 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 AAGABQ6PD74 315 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 LCA5Q86VQ0 697 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 PPWD1Q96BP3 646 aaKnown RBP12.58□□□□□ -0.39
LDLR-205ENST00000557933 APBA2Q99767 749 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 NIFKQ9BYG3 293 aaKnown RBP12.58□□□□□ -0.39
LDLR-205ENST00000557933 AS3MTQ9HBK9 375 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 PTPRHQ9HD43 1115 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 DNAAF2Q9NVR5 837 aaKnown RBP12.58□□□□□ -0.39
LDLR-205ENST00000557933 DPP3Q9NY33 737 aa12.58□□□□□ -0.39
LDLR-205ENST00000557933 BARX2Q9UMQ3 279 aaPredicted RBP12.58□□□□□ -0.39
LDLR-205ENST00000557933 ARID2Q68CP9 1835 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 G3V2L1 256 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 IL1BP01584 269 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 TGM2P21980 687 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 AKAP5P24588 427 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 MBTD1Q05BQ5 628 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 PPP1R3AQ16821 1122 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 MTX3Q5HYI7 312 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 BNC2Q6ZN30 1099 aaPredicted RBP12.58□□□□□ -0.4
LDLR-205ENST00000557933 ARHGAP18Q8N392 663 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 RIN3Q8TB24 985 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 FRMD8P1Q9BZ68 369 aaPredicted RBP12.58□□□□□ -0.4
LDLR-205ENST00000557933 WDR41Q9HAD4 459 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 V9GYQ6 96 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 POLR2AP24928 1970 aaKnown RBP12.58□□□□□ -0.4
LDLR-205ENST00000557933 C7orf72A4D263 438 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 SUPT3HO75486 399 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 MT-ND1P03886 318 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 CDK4P11802 303 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 SERPINB9P50453 376 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 DGKDQ16760 1214 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 DUS1LQ6P1R4 473 aaKnown RBP12.58□□□□□ -0.4
LDLR-205ENST00000557933 TSHZ1Q6ZSZ6 1077 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms