RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 CCDC117Q8IWD4 279 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-214ENST00000554928 ZNF557Q8N988 423 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-214ENST00000554928 TBC1D31Q96DN5 1066 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 MUC3BQ9H195 1237 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 DHX35Q9H5Z1 703 aaKnown RBP12.68□□□□□ -0.38
SYNE2-214ENST00000554928 ZWILCHQ9H900 591 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 CTTNBP2NLQ9P2B4 639 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 VPS51Q9UID3 782 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 VPS28Q9UK41 221 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 PLA2G4CQ9UP65 541 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 AP4E1Q9UPM8 1137 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 MFHAS1Q9Y4C4 1052 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 EML5Q05BV3 1969 aa12.68□□□□□ -0.38
SYNE2-214ENST00000554928 SIN3BO75182 1162 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 ZMPSTE24O75844 475 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 ALDH1A2O94788 518 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 MOCS3O95396 460 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 LMNAP02545 664 aaKnown RBP12.67□□□□□ -0.38
SYNE2-214ENST00000554928 ASLP04424 464 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 RHOQP17081 205 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 FECHP22830 423 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 P2RY2P41231 377 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 TAS2R40P59535 323 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 SLC25A11Q02978 314 aaKnown RBP12.67□□□□□ -0.38
SYNE2-214ENST00000554928 STARD3Q14849 445 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 PLK5Q496M5 336 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 ATP13A4Q4VNC1 1196 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 C9orf64Q5T6V5 341 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 RAD9BQ6WBX8 426 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 LEKR1Q6ZMV7 388 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 CEP68Q76N32 757 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 SETD3Q86TU7 594 aaPredicted RBP12.67□□□□□ -0.38
SYNE2-214ENST00000554928 TMPRSS6Q8IU80 811 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 DEFB119Q8N690 84 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 FRS2Q8WU20 508 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 SPON2Q9BUD6 331 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 KLC2Q9H0B6 622 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 DUSP15Q9H1R2 295 aaPredicted RBP12.67□□□□□ -0.38
SYNE2-214ENST00000554928 TMEM51Q9NW97 253 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 TMEM248Q9NWD8 314 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 USP18Q9UMW8 372 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 CYP8B1Q9UNU6 501 aa12.67□□□□□ -0.38
SYNE2-214ENST00000554928 ILVBLA1L0T0 632 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 RCCD1A6NED2 376 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 TMEM110-MUSTN1A8MSY1 372 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 RNF103O00237 685 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 NPC1O15118 1278 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 SMAD6O43541 496 aaKnown RBP12.66□□□□□ -0.38
SYNE2-214ENST00000554928 PRPSAP2O60256 369 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 SYNCRIPO60506 623 aaKnown RBP12.66□□□□□ -0.38
SYNE2-214ENST00000554928 RNF8O76064 485 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 CD160O95971 181 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 SRPRAP08240 638 aaKnown RBP12.66□□□□□ -0.38
SYNE2-214ENST00000554928 RARAP10276 462 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 SRCP12931 536 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 GOT1P17174 413 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 EPHB2P29323 1055 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 PCK1P35558 622 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 METAP1P53582 386 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 RPS14P62263 151 aaKnown RBP12.66□□□□□ -0.38
SYNE2-214ENST00000554928 ARF5P84085 180 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 GNA12Q03113 381 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 SLC12A1Q13621 1099 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 HNRNPA1L2Q32P51 320 aaKnown RBP12.66□□□□□ -0.38
SYNE2-214ENST00000554928 C6orf118Q5T5N4 469 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 ERMARDQ5T6L9 678 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 TMEM139Q8IV31 216 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 TP53INP2Q8IXH6 220 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 STK40Q8N2I9 435 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 NIPA2Q8N8Q9 360 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 RTL3Q8N8U3 475 aaKnown RBP12.66□□□□□ -0.38
SYNE2-214ENST00000554928 OR2T3Q8NH03 318 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 SLC35G2Q8TBE7 412 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 CTNNBL1Q8WYA6 563 aaPredicted RBP12.66□□□□□ -0.38
SYNE2-214ENST00000554928 SPOCK2Q92563 424 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 PTPRN2Q92932 1015 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 PRDM16Q9HAZ2 1276 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 IP6K2Q9UHH9 426 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 REXO2Q9Y3B8 237 aaKnown RBP12.66□□□□□ -0.38
SYNE2-214ENST00000554928 CKAP5Q14008 2032 aa12.66□□□□□ -0.38
SYNE2-214ENST00000554928 IGHV1OR15-9A0A0B4J2B8 117 aa12.65□□□□□ -0.38
SYNE2-214ENST00000554928 ZNF821O75541 412 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-214ENST00000554928 PROSCO94903 275 aa12.65□□□□□ -0.38
SYNE2-214ENST00000554928 CD48P09326 243 aa12.65□□□□□ -0.38
SYNE2-214ENST00000554928 CDC25BP30305 580 aa12.65□□□□□ -0.38
SYNE2-214ENST00000554928 CNR2P34972 360 aa12.65□□□□□ -0.38
SYNE2-214ENST00000554928 GJC1P36383 396 aa12.65□□□□□ -0.38
SYNE2-214ENST00000554928 MAPKAPK2P49137 400 aa12.65□□□□□ -0.38
SYNE2-214ENST00000554928 AIF1P55008 147 aa12.65□□□□□ -0.38
SYNE2-214ENST00000554928 TPI1P60174 286 aa12.65□□□□□ -0.38
SYNE2-214ENST00000554928 ST8SIA6P61647 398 aa12.65□□□□□ -0.38
SYNE2-214ENST00000554928 PIGHQ14442 188 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-214ENST00000554928 CCDC6Q16204 474 aa12.65□□□□□ -0.38
SYNE2-214ENST00000554928 USP39Q53GS9 565 aaKnown RBP12.65□□□□□ -0.38
SYNE2-214ENST00000554928 PPP6R3Q5H9R7 873 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-214ENST00000554928 ACBD5Q5T8D3 534 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-214ENST00000554928 Q6ZVU0 165 aa12.65□□□□□ -0.38
SYNE2-214ENST00000554928 SH2D3CQ8N5H7 860 aa12.65□□□□□ -0.38
SYNE2-214ENST00000554928 DCAF4L2Q8NA75 395 aa12.65□□□□□ -0.38
SYNE2-214ENST00000554928 HSPH1Q92598 858 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms