RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 GPD1P21695 349 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 ACSL1P33121 698 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 HOXD12P35452 270 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 PRKCIP41743 596 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 DPP6P42658 865 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 HDAC4P56524 1084 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 RPL7AP62424 266 aaKnown RBP10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 NRG1Q02297 640 aaPredicted RBP10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 ASIC2Q16515 512 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 CDO1Q16878 200 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 SKOR2Q2VWA4 1001 aaPredicted RBP10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 TRIM61Q5EBN2 209 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 MANEALQ5VSG8 457 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 RNF219Q5W0B1 726 aaPredicted RBP10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 ZNF776Q68DI1 518 aaPredicted RBP10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 SLC23A3Q6PIS1 610 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 LRRC31Q6UY01 552 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 ZNF571Q7Z3V5 609 aaPredicted RBP10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 SETD3Q86TU7 594 aaPredicted RBP10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 FRS2Q8WU20 508 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 FAM172AQ8WUF8 416 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 DNASE2BQ8WZ79 361 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 PTPRN2Q92932 1015 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 FOXJ1Q92949 421 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 PPP1R9BQ96SB3 815 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 FAM129BQ96TA1 746 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 EDEM2Q9BV94 578 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 SELENOOQ9BVL4 669 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 OSBPL2Q9H1P3 480 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 HAUS4Q9H6D7 363 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 CAPN10Q9HC96 672 aa10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 MUC22E2RYF6 1773 aaPredicted RBP10.56□□□□□ -0.72
CCDC88C-206ENST00000553437 A0A0D9SEW6 157 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 EDDM13A0A1B0GTR0 161 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 C4orf47A7E2U8 309 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 METTL12A8MUP2 240 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 FAM72CH0Y354 149 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 DDX3XO00571 662 aaKnown RBP eCLIP10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 SNAP91O60641 907 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 SRGAP2O75044 1071 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 RHOCP08134 193 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 SKILP12757 684 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 RRM1P23921 792 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 MAOBP27338 520 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 ZNF143P52747 638 aaPredicted RBP10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 UBASH3AP57075 661 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 OGDHQ02218 1023 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 DUOXA1Q1HG43 343 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 FAM72AQ5TYM5 149 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 SFMBT2Q5VUG0 894 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 FAM72DQ6L9T8 149 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 DNAJC24Q6P3W2 148 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 TFAP2DQ7Z6R9 452 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 FAM124AQ86V42 546 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 FAM72BQ86X60 149 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 DNAAF5Q86Y56 855 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 STK40Q8N2I9 435 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 CCDC185Q8N715 623 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 C1orf216Q8TAB5 229 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 CEP76Q8TAP6 659 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 NTAN1Q96AB6 310 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 VCPIP1Q96JH7 1222 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 PABPC3Q9H361 631 aaKnown RBP10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 FSCN3Q9NQT6 498 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 PPARGC1AQ9UBK2 798 aaKnown RBP10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 VPS28Q9UK41 221 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 SLC6A14Q9UN76 642 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 NEU3Q9UQ49 428 aa10.55□□□□□ -0.72
CCDC88C-206ENST00000553437 A0A1W2PQJ5 194 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 ILVBLA1L0T0 632 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 TMCO5BA8MYB1 307 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 C10orf142B7Z368 130 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 CCP110O43303 1012 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 ATMINO43313 823 aaPredicted RBP10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 MT-CO1P00395 513 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 DNTTP04053 509 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 SERPINF2P08697 491 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 GZMAP12544 262 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 ENGP17813 658 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 NNMTP40261 264 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 TPM4P67936 248 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 SCAPQ12770 1279 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 MAMLD1Q13495 774 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 DLG2Q15700 870 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 CST6Q15828 149 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 WDR45BQ5MNZ6 344 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 SYCP2LQ5T4T6 812 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 C6orf118Q5T5N4 469 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 DCAF12L1Q5VU92 463 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 HGSNATQ68CP4 663 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 PLEKHA7Q6IQ23 1121 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 ZNF783Q6ZMS7 281 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 USP30Q70CQ3 517 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 NLRP14Q86W24 1093 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 MMAAQ8IVH4 418 aaKnown RBP10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 SH2D3CQ8N5H7 860 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 MCEEQ96PE7 176 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 NUSAP1Q9BXS6 441 aaKnown RBP10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 ZYG11BQ9C0D3 744 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 BTBD1Q9H0C5 482 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms