RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 DMTF1Q9Y222 760 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 PCDHGB5Q9Y5G0 923 aa17.91■□□□□ 0.46
SYNE3-202ENST00000553340 BTBD19C9JJ37 291 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 LTFP02788 710 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 CHRNGP07510 517 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 FAM58BPP0C7Q3 252 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 EPHA3P29320 983 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 ADSLP30566 484 aaPredicted RBP17.9■□□□□ 0.46
SYNE3-202ENST00000553340 PPARGP37231 505 aaPredicted RBP17.9■□□□□ 0.46
SYNE3-202ENST00000553340 IGBP1P78318 339 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 MYBPC1Q00872 1141 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 DLG2Q15700 870 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 DDI1Q8WTU0 396 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 RCN3Q96D15 328 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 PPP1R36Q96LQ0 422 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 AGAP2Q99490 1192 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 PRPF18Q99633 342 aaKnown RBP17.9■□□□□ 0.46
SYNE3-202ENST00000553340 FZD10Q9ULW2 581 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 SRCAPQ6ZRS2 3230 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 ARHGAP10A1A4S6 786 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 C22orf31O95567 290 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 APOA4P06727 396 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 ME2P23368 584 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 GTF2A2P52657 109 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 PKNOX1P55347 436 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 ARHGAP17Q68EM7 881 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 IYDQ6PHW0 289 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 CPSF7Q8N684 471 aaKnown RBP17.9■□□□□ 0.46
SYNE3-202ENST00000553340 ZFP28Q8NHY6 868 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 PGLYRP2Q96PD5 576 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 MPHOSPH6Q99547 160 aaKnown RBP17.9■□□□□ 0.46
SYNE3-202ENST00000553340 DRC3Q9H069 523 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 RBM38Q9H0Z9 239 aaKnown RBP17.9■□□□□ 0.46
SYNE3-202ENST00000553340 PRDM12Q9H4Q4 367 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 BFARQ9NZS9 450 aa17.9■□□□□ 0.46
SYNE3-202ENST00000553340 TIMM44O43615 452 aa17.89■□□□□ 0.46
SYNE3-202ENST00000553340 ENO3P13929 434 aaPredicted RBP17.89■□□□□ 0.46
SYNE3-202ENST00000553340 MSX2P35548 267 aaPredicted RBP17.89■□□□□ 0.46
SYNE3-202ENST00000553340 BST2Q10589 180 aaKnown RBP17.89■□□□□ 0.46
SYNE3-202ENST00000553340 CEACAM7Q14002 265 aa17.89■□□□□ 0.46
SYNE3-202ENST00000553340 TMEM135Q86UB9 458 aa17.89■□□□□ 0.46
SYNE3-202ENST00000553340 OR6B3Q8NGW1 331 aa17.89■□□□□ 0.46
SYNE3-202ENST00000553340 DNAJC1Q96KC8 554 aaKnown RBP17.89■□□□□ 0.46
SYNE3-202ENST00000553340 WDR41Q9HAD4 459 aa17.89■□□□□ 0.46
SYNE3-202ENST00000553340 PPP1R1BQ9UD71 204 aaPredicted RBP17.89■□□□□ 0.46
SYNE3-202ENST00000553340 VANGL2Q9ULK5 521 aa17.89■□□□□ 0.46
SYNE3-202ENST00000553340 NME7Q9Y5B8 376 aa17.89■□□□□ 0.46
SYNE3-202ENST00000553340 SCN4AP35499 1836 aa17.89■□□□□ 0.45
SYNE3-202ENST00000553340 INHBCP55103 352 aa17.89■□□□□ 0.45
SYNE3-202ENST00000553340 MS4A2Q01362 244 aa17.89■□□□□ 0.45
SYNE3-202ENST00000553340 ART3Q13508 389 aa17.89■□□□□ 0.45
SYNE3-202ENST00000553340 MYLK3Q32MK0 819 aa17.89■□□□□ 0.45
SYNE3-202ENST00000553340 PSTKQ8IV42 348 aaKnown RBP17.89■□□□□ 0.45
SYNE3-202ENST00000553340 LILRA2Q8N149 483 aa17.89■□□□□ 0.45
SYNE3-202ENST00000553340 RNF139Q8WU17 664 aa17.89■□□□□ 0.45
SYNE3-202ENST00000553340 PDCD6IPQ8WUM4 868 aaKnown RBP17.89■□□□□ 0.45
SYNE3-202ENST00000553340 CNKSR2Q8WXI2 1034 aa17.89■□□□□ 0.45
SYNE3-202ENST00000553340 USP13Q92995 863 aaPredicted RBP17.89■□□□□ 0.45
SYNE3-202ENST00000553340 KLRG1Q96E93 195 aa17.89■□□□□ 0.45
SYNE3-202ENST00000553340 AMHP03971 560 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 BCAT1P54687 386 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 USP46P62068 366 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 OLIG2Q13516 323 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 FRG1Q14331 258 aaKnown RBP17.88■□□□□ 0.45
SYNE3-202ENST00000553340 HERC3Q15034 1050 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 C6orf52Q5T4I8 152 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 LIPMQ5VYY2 423 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 IFNLR1Q8IU57 520 aaPredicted RBP17.88■□□□□ 0.45
SYNE3-202ENST00000553340 ALDH16A1Q8IZ83 802 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 DNAAF3Q8N9W5 541 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 SLC7A14Q8TBB6 771 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 RDH11Q8TC12 318 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 PKP2Q99959 881 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 LPIN3Q9BQK8 851 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 ACE2Q9BYF1 805 aaPredicted RBP17.88■□□□□ 0.45
SYNE3-202ENST00000553340 NUF2Q9BZD4 464 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 EFCAB1Q9HAE3 211 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 KLHL8Q9P2G9 620 aaPredicted RBP17.88■□□□□ 0.45
SYNE3-202ENST00000553340 ZCWPW2A0A1B0GU75 182 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 USP12O75317 370 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 BCAS2O75934 225 aaPredicted RBP17.88■□□□□ 0.45
SYNE3-202ENST00000553340 PIGNO95427 931 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 F7P08709 466 aaPredicted RBP17.88■□□□□ 0.45
SYNE3-202ENST00000553340 TFEBP19484 476 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 ADORA2BP29275 332 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 ABCG1P45844 678 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 GRIA4P48058 902 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 PRKAA1Q13131 559 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 MPP3Q13368 585 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 GK3PQ14409 553 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 USP41Q3LFD5 358 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 UNC93AQ86WB7 457 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 GALNT4Q8N4A0 578 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 RNF148Q8N7C7 305 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 ANKRD52Q8NB46 1076 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 SPATC1LQ9H0A9 340 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 PREBQ9HCU5 417 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 GALNT8Q9NY28 637 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 VTI1BQ9UEU0 232 aa17.88■□□□□ 0.45
SYNE3-202ENST00000553340 CDYLQ9Y232 598 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms