RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 BAG6P46379 1132 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 ZNF280AP59817 542 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 USP46P62068 366 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 TNFAIP1Q13829 316 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 R3HDM1Q15032 1099 aaKnown RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 ZNF423Q2M1K9 1284 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 LRRC23Q53EV4 343 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 TREML2Q5T2D2 321 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 C6orf52Q5T4I8 152 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 FAM219BQ5XKK7 198 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 FSTL4Q6MZW2 842 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 IYDQ6PHW0 289 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 DSELQ8IZU8 1212 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 TMEM151AQ8N4L1 468 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 TDRD5Q8NAT2 981 aaKnown RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 KBTBD7Q8WVZ9 684 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 CENPIQ92674 756 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 CDKL2Q92772 493 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 USP13Q92995 863 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 DGCR14Q96DF8 476 aaKnown RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 CERS2Q96G23 380 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 HIC2Q96JB3 615 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 MARK4Q96L34 752 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 CNBD2Q96M20 576 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 KLHL32Q96NJ5 620 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 PKP2Q99959 881 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 GRIP2Q9C0E4 1043 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 SENP6Q9GZR1 1112 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 COPS7BQ9H9Q2 264 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 PICK1Q9NRD5 415 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 DDX18Q9NVP1 670 aaKnown RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 LMCD1Q9NZU5 365 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 MORF4L1Q9UBU8 362 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 STK39Q9UEW8 545 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 GTF2IRD1Q9UHL9 959 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 MAGED2Q9UNF1 606 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 SNX9Q9Y5X1 595 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 AP4B1Q9Y6B7 739 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 RPS6KL1Q9Y6S9 549 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 A0A087WZ62 844 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 GOLGA8TH3BQL2 631 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 IRF6O14896 467 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 HNRNPRO43390 633 aaKnown RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 CREB3O43889 395 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 GAS2O43903 313 aaKnown RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 HSPA4LO95757 839 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 CLPTM1O96005 669 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 PENKP01210 267 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 PGK2P07205 417 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 ARSAP15289 507 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 ZFXP17010 805 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 GP5P40197 560 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 RPL5P46777 297 aaKnown RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 NR2C2P49116 596 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 IGBP1P78318 339 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 NAB1Q13506 487 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 MAP7Q14244 749 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 ADGRE1Q14246 886 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 TMEM132DQ14C87 1099 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 Q3C1V9 767 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 LSM12Q3MHD2 195 aaKnown RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 PIGGQ5H8A4 983 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 FSCBQ5H9T9 825 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 STRA8Q7Z7C7 330 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 CLEC14AQ86T13 490 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 FAM131BQ86XD5 332 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 ZNF567Q8N184 647 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 FAM156AQ8NDB6 213 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 OR52K1Q8NGK4 314 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 ISL2Q96A47 359 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 RCN3Q96D15 328 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 FAM167AQ96KS9 214 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 ZMAT2Q96NC0 199 aaKnown RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 AGAP3Q96P47 875 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 KCNK16Q96T55 309 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 RBBP8Q99708 897 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 FDXACB1Q9BRP7 624 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 AS3MTQ9HBK9 375 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 TCF7L2Q9NQB0 619 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 DPP3Q9NY33 737 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 SEPT10Q9P0V9 454 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 GJD2Q9UKL4 321 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 KIAA1257Q9ULG3 409 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 GNEQ9Y223 722 aaKnown RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 SHROOM3Q8TF72 1996 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 PAPPA2Q9BXP8 1791 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 A0A096LPK6 155 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 ZCWPW2A0A1B0GU75 182 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 KCNK1O00180 336 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 MATN2O00339 956 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 CFLARO15519 480 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 GRID2O43424 1007 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 C2P06681 752 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 P4HA1P13674 534 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 LCP1P13796 627 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 CCDC130P13994 396 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 DESP17661 470 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 PTPN1P18031 435 aaKnown RBP5.53□□□□□ -1.52
LIMA1-212ENST00000552491 MX2P20592 715 aa5.53□□□□□ -1.52
LIMA1-212ENST00000552491 RGS2P41220 211 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms