RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 ZBTB24O43167 697 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 COCHO43405 550 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 CACNG3O60359 315 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 MAFKO60675 156 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 SHOX2O60902 331 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 POLBP06746 335 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 HMBSP08397 361 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 CNPP09543 421 aaKnown RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 CES1P23141 567 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 CNTFP26441 200 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 PSMB4P28070 264 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 OR1E1P30953 314 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 MDH1P40925 334 aaKnown RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 SLCO1A2P46721 670 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 PAPOLAP51003 745 aaKnown RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 IL10RBQ08334 325 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 LAMB3Q13751 1172 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 FRG1Q14331 258 aaKnown RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 KCTD19Q17RG1 926 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 MARC1Q5VT66 337 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 RAP1GAP2Q684P5 730 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 LILRA6Q6PI73 481 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 ZNF783Q6ZMS7 281 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 CHST9Q7L1S5 443 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 C14orf80Q86SX3 495 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 CCDC117Q8IWD4 279 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 ARHGAP12Q8IWW6 846 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 C7orf61Q8IZ16 206 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 PDCD7Q8N8D1 485 aaKnown RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 MRPL43Q8N983 215 aaKnown RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 GABPB2Q8TAK5 448 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 GSDMBQ8TAX9 411 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 CELF6Q96J87 481 aaKnown RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 AGAP3Q96P47 875 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 KLHL5Q96PQ7 755 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 SP110Q9HB58 689 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 GLOD4Q9HC38 313 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 ENTPD7Q9NQZ7 604 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 LSM7Q9UK45 103 aaKnown RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 CHMP2BQ9UQN3 213 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 MAD1L1Q9Y6D9 718 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 COL4A6Q14031 1691 aa13.74□□□□□ -0.21
PTCH1-215ENST00000547672 KIAA0100Q14667 2235 aaKnown RBP13.74□□□□□ -0.21
PTCH1-215ENST00000547672 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-215ENST00000547672 RASA4BC9J798 803 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 POC1B-GALNT4F8VUJ3 575 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 RASA4O43374 803 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 GLUD1P00367 558 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 OAS1P00973 400 aaKnown RBP13.73□□□□□ -0.21
PTCH1-215ENST00000547672 F11P03951 625 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 INHBAP08476 426 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 PGAM1P18669 254 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 KRT15P19012 456 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 HDCP19113 662 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 DDX6P26196 483 aaKnown RBP eCLIP13.73□□□□□ -0.21
PTCH1-215ENST00000547672 CTNNB1P35222 781 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 SERPINB9P50453 376 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 SLC18A1P54219 525 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 OXCT1P55809 520 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 GPX6P59796 221 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 TNK2Q07912 1038 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 ILF2Q12905 390 aaKnown RBP13.73□□□□□ -0.21
PTCH1-215ENST00000547672 ZNF177Q13360 481 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-215ENST00000547672 RFTN1Q14699 578 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-215ENST00000547672 MSS51Q4VC12 460 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 FAXCQ5TGI0 409 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 CASC4Q6P4E1 433 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 ADGRD1Q6QNK2 874 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 TMCO2Q7Z6W1 182 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-215ENST00000547672 SETD3Q86TU7 594 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-215ENST00000547672 LRRC6Q86X45 466 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 KLHDC8BQ8IXV7 354 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 LGI2Q8N0V4 545 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 SH2D3CQ8N5H7 860 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 DNAAF3Q8N9W5 541 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 KREMEN2Q8NCW0 462 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 FBF1Q8TES7 1133 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 MAML1Q92585 1016 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 TTC17Q96AE7 1141 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 MTBPQ96DY7 904 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 SIGLEC10Q96LC7 697 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 KLF16Q9BXK1 252 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-215ENST00000547672 IL22Q9GZX6 179 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 SSU72Q9NP77 194 aaKnown RBP13.73□□□□□ -0.21
PTCH1-215ENST00000547672 VPS45Q9NRW7 570 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 RBM22Q9NW64 420 aaKnown RBP eCLIP13.73□□□□□ -0.21
PTCH1-215ENST00000547672 NKIRAS1Q9NYS0 192 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 MPP6Q9NZW5 540 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 ZNF180Q9UJW8 692 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 SMG5Q9UPR3 1016 aaKnown RBP13.73□□□□□ -0.21
PTCH1-215ENST00000547672 NEU3Q9UQ49 428 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 PCDHA11Q9Y5I1 949 aa13.73□□□□□ -0.21
PTCH1-215ENST00000547672 ILVBLA1L0T0 632 aa13.72□□□□□ -0.21
PTCH1-215ENST00000547672 C5orf67F2Z3F1 127 aa13.72□□□□□ -0.21
PTCH1-215ENST00000547672 TGM5O43548 720 aa13.72□□□□□ -0.21
PTCH1-215ENST00000547672 KRT37O76014 449 aa13.72□□□□□ -0.21
PTCH1-215ENST00000547672 KRT38O76015 456 aa13.72□□□□□ -0.21
PTCH1-215ENST00000547672 STC2O76061 302 aa13.72□□□□□ -0.21
PTCH1-215ENST00000547672 MBL2P11226 248 aaPredicted RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms