RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 ZNF474Q6S9Z5 364 aaPredicted RBP3.56□□□□□ -1.84
USP28-210ENST00000542033 LRIG3Q6UXM1 1119 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 KRBA2Q6ZNG9 492 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 C1orf122Q6ZSJ8 110 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 TMTC1Q8IUR5 882 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 EGFL6Q8IUX8 553 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 NANOGP1Q8N7R0 232 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 ENDOVQ8N8Q3 282 aaKnown RBP3.56□□□□□ -1.84
USP28-210ENST00000542033 FSIP1Q8NA03 581 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 SLC2A12Q8TD20 617 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 CSGALNACT1Q8TDX6 532 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 AFG1LQ8WV93 481 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 SNRNP27Q8WVK2 155 aaKnown RBP3.56□□□□□ -1.84
USP28-210ENST00000542033 THAP4Q8WY91 577 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 HDAC2Q92769 488 aaKnown RBP3.56□□□□□ -1.84
USP28-210ENST00000542033 SDCCAG3Q96C92 435 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 ZNF347Q96SE7 839 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 TMEM79Q9BSE2 394 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 TUBB6Q9BUF5 446 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 MOV10Q9HCE1 1003 aaKnown RBP3.56□□□□□ -1.84
USP28-210ENST00000542033 MLXIPLQ9NP71 852 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 UBN1Q9NPG3 1134 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 RIC8AQ9NPQ8 531 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 TMEM184CQ9NVA4 438 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 TMEM45AQ9NWC5 275 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 TRNAU1APQ9NX07 287 aaKnown RBP3.56□□□□□ -1.84
USP28-210ENST00000542033 IFT80Q9P2H3 777 aaPredicted RBP3.56□□□□□ -1.84
USP28-210ENST00000542033 SLC25A13Q9UJS0 675 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 TNFSF13BQ9Y275 285 aa3.56□□□□□ -1.84
USP28-210ENST00000542033 CCDC196A0A1B0GTZ2 297 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 MCIDASD6RGH6 385 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 GRM8O00222 908 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 HOXC11O43248 304 aaPredicted RBP3.55□□□□□ -1.84
USP28-210ENST00000542033 TIMM44O43615 452 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 MOSPD3O75425 235 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 BAIAP3O94812 1187 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 FGBP02675 491 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 TFRCP02786 760 aaKnown RBP3.55□□□□□ -1.84
USP28-210ENST00000542033 CYP19A1P11511 503 aaPredicted RBP3.55□□□□□ -1.84
USP28-210ENST00000542033 CKMT1AP12532 417 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 HOXD9P28356 352 aaPredicted RBP3.55□□□□□ -1.84
USP28-210ENST00000542033 CIITAP33076 1130 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 SSR1P43307 286 aaKnown RBP3.55□□□□□ -1.84
USP28-210ENST00000542033 OAZ1P54368 228 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 VAMP2P63027 116 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 B4GALNT1Q00973 533 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 ALKBH1Q13686 389 aaKnown RBP3.55□□□□□ -1.84
USP28-210ENST00000542033 KLF9Q13886 244 aaPredicted RBP3.55□□□□□ -1.84
USP28-210ENST00000542033 GALNT3Q14435 633 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 KCTD2Q14681 263 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 SMAD1Q15797 465 aaKnown RBP3.55□□□□□ -1.84
USP28-210ENST00000542033 C10orf76Q5T2E6 689 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 TTLL5Q6EMB2 1281 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 C11orf87Q6NUJ2 197 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 FAM180BQ6P0A1 224 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 SHC4Q6S5L8 630 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 DEF8Q6ZN54 512 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 CYB5R4Q7L1T6 521 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 ANKS1BQ7Z6G8 1248 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 MRPL10Q7Z7H8 261 aaKnown RBP3.55□□□□□ -1.84
USP28-210ENST00000542033 C2CD5Q86YS7 1000 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 TMTC2Q8N394 836 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 ESX1Q8N693 406 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 OTUD6BQ8N6M0 293 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 ARL14EPQ8N8R7 260 aaPredicted RBP3.55□□□□□ -1.84
USP28-210ENST00000542033 PCYOX1LQ8NBM8 494 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 OR52N4Q8NGI2 321 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 SCARB1Q8WTV0 552 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 HERVK_113Q902F9 699 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 ARRDC3Q96B67 414 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 ADAD1Q96M93 576 aaKnown RBP3.55□□□□□ -1.84
USP28-210ENST00000542033 NPAS1Q99742 590 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 ABHD16BQ9H3Z7 469 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 CHODLQ9H9P2 273 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 G6PC2Q9NQR9 355 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 PAPOLBQ9NRJ5 636 aaKnown RBP3.55□□□□□ -1.84
USP28-210ENST00000542033 MTMR4Q9NYA4 1195 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 RPS6KL1Q9Y6S9 549 aa3.55□□□□□ -1.84
USP28-210ENST00000542033 LMTK3Q96Q04 1460 aa3.54□□□□□ -1.84
USP28-210ENST00000542033 FNDC1Q4ZHG4 1894 aaPredicted RBP3.54□□□□□ -1.84
USP28-210ENST00000542033 PPEF2O14830 753 aa3.54□□□□□ -1.84
USP28-210ENST00000542033 PRPF4O43172 522 aaKnown RBP eCLIP3.54□□□□□ -1.84
USP28-210ENST00000542033 MSI1O43347 362 aaKnown RBP3.54□□□□□ -1.84
USP28-210ENST00000542033 CCNT1O60563 726 aaKnown RBP3.54□□□□□ -1.84
USP28-210ENST00000542033 TLR2O60603 784 aa3.54□□□□□ -1.84
USP28-210ENST00000542033 LETM1O95202 739 aaPredicted RBP3.54□□□□□ -1.84
USP28-210ENST00000542033 BMP15O95972 392 aa3.54□□□□□ -1.84
USP28-210ENST00000542033 TOP3BO95985 862 aaKnown RBP3.54□□□□□ -1.84
USP28-210ENST00000542033 CD4P01730 458 aa3.54□□□□□ -1.84
USP28-210ENST00000542033 POLBP06746 335 aa3.54□□□□□ -1.84
USP28-210ENST00000542033 HOXB9P17482 250 aaPredicted RBP3.54□□□□□ -1.84
USP28-210ENST00000542033 RXRAP19793 462 aa3.54□□□□□ -1.84
USP28-210ENST00000542033 CNTFP26441 200 aa3.54□□□□□ -1.84
USP28-210ENST00000542033 STAT1P42224 750 aa3.54□□□□□ -1.84
USP28-210ENST00000542033 TERF1P54274 439 aa3.54□□□□□ -1.84
USP28-210ENST00000542033 ADPRHP54922 357 aa3.54□□□□□ -1.84
USP28-210ENST00000542033 ACTR2P61160 394 aa3.54□□□□□ -1.84
USP28-210ENST00000542033 CDK18Q07002 472 aa3.54□□□□□ -1.84
USP28-210ENST00000542033 TRPC3Q13507 836 aa3.54□□□□□ -1.84
USP28-210ENST00000542033 DCTN1Q14203 1278 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms