RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 GATAD2AQ86YP4 633 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 TRIM59Q8IWR1 403 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 NDUFAF2Q8N183 169 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 CCNYL1Q8N7R7 359 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 PDCD6IPQ8WUM4 868 aaKnown RBP9.65□□□□□ -0.86
CLIP1-214ENST00000540539 SLC44A1Q8WWI5 657 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 RILPQ96NA2 401 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 EYA3Q99504 573 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 TRPV6Q9H1D0 765 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 RAD21L1Q9H4I0 556 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 TOR4AQ9NXH8 423 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 PKD2L2Q9NZM6 624 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 PKD2L1Q9P0L9 805 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 MARCOQ9UEW3 520 aaPredicted RBP9.65□□□□□ -0.86
CLIP1-214ENST00000540539 ZNF221Q9UK13 617 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 RNF112Q9ULX5 631 aa9.65□□□□□ -0.86
CLIP1-214ENST00000540539 FER1L6Q2WGJ9 1857 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 TOMM70O94826 608 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 PGK2P07205 417 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 SLC9A1P19634 815 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 MATN1P21941 496 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 PIK3R1P27986 724 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 RBL1P28749 1068 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 CYP2C18P33260 490 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 ETV4P43268 484 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 ABCG1P45844 678 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 ACOT2P49753 483 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 ARHGDIAP52565 204 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 SP140Q13342 867 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 PFKFB3Q16875 520 aaPredicted RBP9.65□□□□□ -0.87
CLIP1-214ENST00000540539 C5orf22Q49AR2 442 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 ATAD3CQ5T2N8 411 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 ZNF704Q6ZNC4 412 aaPredicted RBP9.65□□□□□ -0.87
CLIP1-214ENST00000540539 KIAA0408Q6ZU52 694 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 PIWIL3Q7Z3Z3 882 aaKnown RBP9.65□□□□□ -0.87
CLIP1-214ENST00000540539 HID1Q8IV36 788 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 CCDC60Q8IWA6 550 aaPredicted RBP9.65□□□□□ -0.87
CLIP1-214ENST00000540539 CLYBLQ8N0X4 340 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 EID3Q8N140 333 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 OR2T3Q8NH03 318 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 ZFP90Q8TF47 636 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 SECISBP2Q96T21 854 aaKnown RBP9.65□□□□□ -0.87
CLIP1-214ENST00000540539 EBF4Q9BQW3 602 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 GON7Q9BXV9 100 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 MFRPQ9BY79 579 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 RHOBTB2Q9BYZ6 727 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 SLA2Q9H6Q3 261 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 COQ10BQ9H8M1 238 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 ERVMER34-1Q9H9K5 563 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 MAGEF1Q9HAY2 307 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 DDX28Q9NUL7 540 aaKnown RBP9.65□□□□□ -0.87
CLIP1-214ENST00000540539 DNAJC28Q9NX36 388 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 AJAP1Q9UKB5 411 aaPredicted RBP9.65□□□□□ -0.87
CLIP1-214ENST00000540539 ITGA11Q9UKX5 1188 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 PCDHAC2Q9Y5I4 1007 aa9.65□□□□□ -0.87
CLIP1-214ENST00000540539 SDR42E2A6NKP2 422 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 UGT2B4P06133 528 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 KITP10721 976 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 HNF1BP35680 557 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 GJC1P36383 396 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 HARS2P49590 506 aaKnown RBP9.64□□□□□ -0.87
CLIP1-214ENST00000540539 TMBIM6P55061 237 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 FASTKD3Q14CZ7 662 aaKnown RBP9.64□□□□□ -0.87
CLIP1-214ENST00000540539 TOR2AQ5JU69 321 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 GLYCTKQ8IVS8 523 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 MFSD4AQ8N468 514 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 TMEM35BQ8NCS4 154 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 OR6F1Q8NGZ6 308 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 SLC10A4Q96EP9 437 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 CEP95Q96GE4 821 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 BTBD6Q96KE9 485 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 KCNK16Q96T55 309 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 MTG1Q9BT17 334 aaPredicted RBP9.64□□□□□ -0.87
CLIP1-214ENST00000540539 WACQ9BTA9 647 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 BTBD2Q9BX70 525 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 VRTNQ9H8Y1 702 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 SAYSD1Q9NPB0 183 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 DPP7Q9UHL4 492 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 PSME2Q9UL46 239 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 STRIP2Q9ULQ0 834 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 DIMT1Q9UNQ2 313 aaKnown RBP9.64□□□□□ -0.87
CLIP1-214ENST00000540539 UTRNP46939 3433 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 C2orf81A6NN90 581 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 FAM155AB1AL88 458 aaPredicted RBP9.64□□□□□ -0.87
CLIP1-214ENST00000540539 H0YJX3 145 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 PDHXO00330 501 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 EXTL3O43909 919 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 ACAT1P24752 427 aaKnown RBP9.64□□□□□ -0.87
CLIP1-214ENST00000540539 PSMC2P35998 433 aaKnown RBP9.64□□□□□ -0.87
CLIP1-214ENST00000540539 SQLEQ14534 574 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 NEDD8Q15843 81 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 Q5BKY6 102 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 FAM209BQ5JX69 171 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 CCNJQ5T5M9 372 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 TTC33Q6PID6 262 aaPredicted RBP9.64□□□□□ -0.87
CLIP1-214ENST00000540539 ZNF654Q8IZM8 581 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 PJA1Q8NG27 643 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 SLC30A5Q8TAD4 765 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 LRRC20Q8TCA0 184 aa9.64□□□□□ -0.87
CLIP1-214ENST00000540539 KCTD4Q8WVF5 259 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms