RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 ZNF26P17031 533 aaPredicted RBP13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 UGT1A6P19224 532 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 UGT1A1P22309 533 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 UGT1A4P22310 534 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 EEF1B2P24534 225 aaKnown RBP13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 CDH5P33151 784 aaPredicted RBP13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 UGT1A3P35503 534 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 UGT1A5P35504 534 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 RXRGP48443 463 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 NAGLUP54802 743 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 PSME3P61289 254 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 NEDD8Q15843 81 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 XKR3Q5GH77 459 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 TMEM53Q6P2H8 277 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 TMEM102Q8N9M5 508 aaPredicted RBP13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 SLC29A1Q99808 456 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 CCDC68Q9H2F9 335 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 NMRAL1Q9HBL8 299 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 PXMP2Q9NR77 195 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 GID8Q9NWU2 228 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 GTSE1Q9NYZ3 720 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 GREB1LQ9C091 1923 aaPredicted RBP13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 LTFP02788 710 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 CCND2P30279 289 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 ALDH3B2P48448 385 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 MCCD1P59942 119 aaPredicted RBP13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 PTPN11Q06124 597 aaPredicted RBP13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 TRAF2Q12933 501 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 BNIP3Q12983 259 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 DGKDQ16760 1214 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 CA9Q16790 459 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 GK5Q6ZS86 529 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 ZNF534Q76KX8 674 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 CENPSQ8N2Z9 138 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 FIBCD1Q8N539 461 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 SNRNP25Q9BV90 132 aaKnown RBP13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 PRDM16Q9HAZ2 1276 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 CCDC78A2IDD5 438 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 TMEM247A6NEH6 219 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 ZNF839A8K0R7 811 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 TMX2-CTNND1H3BSU7 103 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 NR3C2P08235 984 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 PGAM1P18669 254 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 TPSB2P20231 275 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 GLDCP23378 1020 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 HOXD12P35452 270 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 NAMPTP43490 491 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 ACTR2P61160 394 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 IRF9Q00978 393 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 BAATQ14032 418 aaPredicted RBP13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 NR1D2Q14995 579 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 TPSAB1Q15661 275 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 STRIP1Q5VSL9 837 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 C4orf22Q6V702 233 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 PGLYRP2Q96PD5 576 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 C1orf232A0A0U1RR37 186 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 KANSL1LA0AUZ9 987 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 KCNU1A8MYU2 1149 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 PLOD2O00469 737 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 DPP6P42658 865 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 GRIA4P48058 902 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 BCAP31P51572 246 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 GSTM4Q03013 218 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 ITGADQ13349 1161 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 USP41Q3LFD5 358 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 ZBED5Q49AG3 693 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 C6orf183Q5T699 404 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 C14orf80Q86SX3 495 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 GPR180Q86V85 440 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 SIX6OS1Q8N1H7 587 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 COLGALT1Q8NBJ5 622 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 RDM1Q8NG50 284 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 LPGAT1Q92604 370 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 CASP10Q92851 521 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 APBA2Q99767 749 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 SLC2A11Q9BYW1 496 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 LHX5Q9H2C1 402 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 POLR1BQ9H9Y6 1135 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 SYBUQ9NX95 663 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 MID2Q9UJV3 735 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 SLC39A10Q9ULF5 831 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 RAP2CQ9Y3L5 183 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 COL5A3P25940 1745 aaPredicted RBP13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 HEATR9A2RTY3 570 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 TMEM114B3SHH9 223 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 HTRA2O43464 458 aaPredicted RBP13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 NFKBIAP25963 317 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 TUBA4AP68366 448 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 TXNL4AP83876 142 aaKnown RBP13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 TRIM16LQ309B1 348 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 ZNF829Q3KNS6 432 aaPredicted RBP13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 ARL13AQ5H913 290 aaPredicted RBP13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 EGFLAMQ63HQ2 1017 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 RSBN1LQ6PCB5 846 aaPredicted RBP13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 HM13Q8TCT9 377 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 SLC35B4Q969S0 331 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 UNKQ9C0B0 810 aaKnown RBP13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 HIPK3Q9H422 1215 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 OLAHQ9NV23 265 aa13.08□□□□□ -0.32
SFSWAP-209ENST00000540469 GPC4O75487 556 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms