RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 ARMCX1Q9P291 453 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 SNX10Q9Y5X0 201 aa11□□□□□ -0.65
CLIP1-213ENST00000540338 H2AFYO75367 372 aaKnown RBP10.99□□□□□ -0.65
CLIP1-213ENST00000540338 SLC5A3P53794 718 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 ELAVL2Q12926 359 aaKnown RBP10.99□□□□□ -0.65
CLIP1-213ENST00000540338 ART3Q13508 389 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 HIC1Q14526 733 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 ANKRD20A4Q4UJ75 823 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 CERCAMQ5T4B2 595 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 SLC24A5Q71RS6 500 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 MON1AQ86VX9 555 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 NUP93Q8N1F7 819 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 PIWIL2Q8TC59 973 aaKnown RBP10.99□□□□□ -0.65
CLIP1-213ENST00000540338 SLC2A13Q96QE2 648 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 SERPINI1Q99574 410 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 FAM167BQ9BTA0 163 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 RHOBTB2Q9BYZ6 727 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 PPP1R12CQ9BZL4 782 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 GBA3Q9H227 469 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 VCX3BQ9H321 246 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 TAGLN3Q9UI15 199 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 MAP3K7O43318 606 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 TRIM13O60858 407 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 ANP32DO95626 131 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 ATP5BP06576 529 aaKnown RBP10.99□□□□□ -0.65
CLIP1-213ENST00000540338 VAV1P15498 845 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 AVPR1AP37288 418 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 ABCG1P45844 678 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 CSE1LP55060 971 aaKnown RBP10.99□□□□□ -0.65
CLIP1-213ENST00000540338 PRKCZQ05513 592 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 CLNKQ7Z7G1 428 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 SERINC5Q86VE9 423 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 DCLK2Q8N568 766 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 PRKD2Q9BZL6 878 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 ATXN3LQ9H3M9 355 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 CYP4F11Q9HBI6 524 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 OLA1Q9NTK5 396 aaKnown RBP10.99□□□□□ -0.65
CLIP1-213ENST00000540338 MYADML2A6NDP7 307 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 MEIS3P2A8K0S8 358 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 HOXA2O43364 376 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 DGKIO75912 1065 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 TYMPP19971 482 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 GLRBP48167 497 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 RIPK1Q13546 671 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 WASHC2DQ5SRD0 308 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 IL31Q6EBC2 164 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 AGMOQ6ZNB7 445 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 C10orf82Q8WW14 230 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 SEPT8Q92599 483 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 VCXQ9H320 206 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 NMRAL1Q9HBL8 299 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 FNDC3AQ9Y2H6 1198 aaKnown RBP10.99□□□□□ -0.65
CLIP1-213ENST00000540338 L3MBTL1Q9Y468 752 aa10.99□□□□□ -0.65
CLIP1-213ENST00000540338 RTN3O95197 1032 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-213ENST00000540338 OR4Q2P0C623 313 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 GCAP28676 217 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 PPIDQ08752 370 aaKnown RBP10.98□□□□□ -0.65
CLIP1-213ENST00000540338 EXT2Q93063 718 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 RMDN1Q96DB5 314 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 C7orf26Q96N11 449 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 LRMDAQ9H2I8 198 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 GPBP1L1Q9HC44 474 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-213ENST00000540338 SNX15Q9NRS6 342 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 MIOSQ9NXC5 875 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 SF3B1O75533 1304 aaKnown RBP eCLIP10.98□□□□□ -0.651e-10■■■■■ 241.2
CLIP1-213ENST00000540338 NEMP1O14524 444 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 MSI1O43347 362 aaKnown RBP10.98□□□□□ -0.65
CLIP1-213ENST00000540338 HARS2P49590 506 aaKnown RBP10.98□□□□□ -0.65
CLIP1-213ENST00000540338 CUL3Q13618 768 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 DDR2Q16832 855 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 INSCQ1MX18 579 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 FAM83EQ2M2I3 478 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 SDHAF4Q5VUM1 108 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 TMPRSS6Q8IU80 811 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 HDAC11Q96DB2 347 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 FBXO6Q9NRD1 293 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-213ENST00000540338 TRMT13Q9NUP7 481 aaKnown RBP10.98□□□□□ -0.65
CLIP1-213ENST00000540338 LOC100653049A0A140TA62 436 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 GABRDO14764 452 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 CFLARO15519 480 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 MGRN1O60291 552 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 KRT34O76011 436 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 STX1BP61266 288 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 AP2B1P63010 937 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 SCAMP5Q8TAC9 235 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 KHSRPQ92945 711 aaKnown RBP eCLIP10.98□□□□□ -0.652e-6■■■■□ 20.7
CLIP1-213ENST00000540338 PPP1R36Q96LQ0 422 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 TEKT5Q96M29 485 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 BEGAINQ9BUH8 593 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 FTHL17Q9BXU8 183 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 SENP6Q9GZR1 1112 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-213ENST00000540338 DCLRE1BQ9H816 532 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 AGO3Q9H9G7 860 aaKnown RBP10.98□□□□□ -0.65
CLIP1-213ENST00000540338 IL1RAPL1Q9NZN1 696 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 MARCH2Q9P0N8 246 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 PCDHB8Q9UN66 801 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 F5H5T6 163 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 RAMP2O60895 175 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 UPP2O95045 317 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 CCNCP24863 283 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms