RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 OR51B4Q9Y5P0 310 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 HS3ST4Q9Y661 456 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 PLXNB3Q9ULL4 1909 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 PKD1L2Q7Z442 2459 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 AKAP13Q12802 2813 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 ZFYVE26Q68DK2 2539 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.7□□□□□ -1.02
USP28-203ENST00000537490 GTPBP10A4D1E9 387 aaKnown RBP8.7□□□□□ -1.02
USP28-203ENST00000537490 I6L893 689 aaPredicted RBP8.7□□□□□ -1.02
USP28-203ENST00000537490 M0QYT0 321 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 TLR4O00206 839 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 LATO43561 262 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 ATP9BO43861 1147 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 HSF2BPO75031 334 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 RTN2O75298 545 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 PAGE1O75459 146 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 CNTN5O94779 1100 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 ITGAVP06756 1048 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 TFE3P19532 575 aaPredicted RBP8.7□□□□□ -1.02
USP28-203ENST00000537490 NOS2P35228 1153 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 VASPP50552 380 aaPredicted RBP8.7□□□□□ -1.02
USP28-203ENST00000537490 OXCT1P55809 520 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 SLC6A3Q01959 620 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 PTK2Q05397 1052 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 CYP4F3Q08477 520 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 BNIP3Q12983 259 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 NME3Q13232 169 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 ZNF177Q13360 481 aaPredicted RBP8.7□□□□□ -1.02
USP28-203ENST00000537490 CAMK2BQ13554 666 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 ELAVL3Q14576 367 aaKnown RBP8.7□□□□□ -1.02
USP28-203ENST00000537490 DLG2Q15700 870 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 SMAD1Q15797 465 aaKnown RBP8.7□□□□□ -1.02
USP28-203ENST00000537490 POM121L1PQ3SYA9 428 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 C5orf22Q49AR2 442 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 ACCSLQ4AC99 568 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 PTPN20Q4JDL3 420 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 RABGAP1LQ5R372 815 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 TTC39BQ5VTQ0 682 aaPredicted RBP8.7□□□□□ -1.02
USP28-203ENST00000537490 OTUD1Q5VV17 481 aaPredicted RBP8.7□□□□□ -1.02
USP28-203ENST00000537490 DPY19L2P1Q6NXN4 242 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 DHRS13Q6UX07 377 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 SLC47A2Q86VL8 602 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 SPATS2Q86XZ4 545 aaKnown RBP8.7□□□□□ -1.02
USP28-203ENST00000537490 SAP25Q8TEE9 199 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 OR8D1Q8WZ84 308 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 FAM131CQ96AQ9 280 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 SKA1Q96BD8 255 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 SERAC1Q96JX3 654 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 SPAG5Q96R06 1193 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 FEM1AQ9BSK4 669 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 SIK2Q9H0K1 926 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 PLCB1Q9NQ66 1216 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 ARHGAP20Q9P2F6 1191 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 FTSJ1Q9UET6 329 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 PPM1HQ9ULR3 514 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 RAXQ9Y2V3 346 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 SNX10Q9Y5X0 201 aa8.7□□□□□ -1.02
USP28-203ENST00000537490 FAM170AA1A519 330 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 ENC1O14682 589 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 MCF2LO15068 1137 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 CLDN11O75508 207 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 DAB1O75553 588 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 ADCY5O95622 1261 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 LDOC1O95751 146 aaPredicted RBP8.69□□□□□ -1.02
USP28-203ENST00000537490 MT-CO1P00395 513 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 MAT2AP31153 395 aaKnown RBP8.69□□□□□ -1.02
USP28-203ENST00000537490 KRT9P35527 623 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 MTIF2P46199 727 aaKnown RBP8.69□□□□□ -1.02
USP28-203ENST00000537490 CLDN6P56747 220 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 NXPH1P58417 271 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 RNASE9P60153 205 aaKnown RBP8.69□□□□□ -1.02
USP28-203ENST00000537490 KCNMA1Q12791 1236 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 CNTN1Q12860 1018 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 DNAJC3Q13217 504 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 COL9A2Q14055 689 aaPredicted RBP8.69□□□□□ -1.02
USP28-203ENST00000537490 COL28A1Q2UY09 1125 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 ALFQ53S48 1182 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 AGBL4Q5VU57 503 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 NAPEPLDQ6IQ20 393 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 Q6ZVU0 165 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 SLC26A9Q7LBE3 791 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 PRPF39Q86UA1 669 aaKnown RBP8.69□□□□□ -1.02
USP28-203ENST00000537490 FAM71AQ8IYT1 594 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 ZNF683Q8IZ20 524 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 GALNT15Q8N3T1 639 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 SH2D3CQ8N5H7 860 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 EID2Q8N6I1 236 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 ZNF397Q8NF99 534 aaPredicted RBP8.69□□□□□ -1.02
USP28-203ENST00000537490 PIP4K2CQ8TBX8 421 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 HNRNPLLQ8WVV9 542 aaKnown RBP8.69□□□□□ -1.02
USP28-203ENST00000537490 CNDP2Q96KP4 475 aaKnown RBP8.69□□□□□ -1.02
USP28-203ENST00000537490 NOX5Q96PH1 765 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 PPP1R9BQ96SB3 815 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 PSMB7Q99436 277 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 NPY6RQ99463 290 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 GDF3Q9NR23 364 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 TMPRSS4Q9NRS4 437 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 PIGVQ9NUD9 493 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 ARHGEF38Q9NXL2 777 aa8.69□□□□□ -1.02
USP28-203ENST00000537490 SLC25A13Q9UJS0 675 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms