RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 SMTNL1A8MU46 457 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 WNT9AO14904 365 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 KHNYNO15037 678 aaKnown RBP10.95□□□□□ -0.66
CD44-227ENST00000528086 MID1O15344 667 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 ATP9BO43861 1147 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 CLDN11O75508 207 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 F9P00740 461 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 IGHV4-34P06331 123 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 CTSLP07711 333 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 TPM2P07951 284 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 SKILP12757 684 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 DRD3P35462 400 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 PRKCIP41743 596 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 FANCCQ00597 558 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 NRG1Q02297 640 aaPredicted RBP10.95□□□□□ -0.66
CD44-227ENST00000528086 C1QBPQ07021 282 aaKnown RBP10.95□□□□□ -0.66
CD44-227ENST00000528086 SLC12A1Q13621 1099 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 CST6Q15828 149 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 CDO1Q16878 200 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 KCNT1Q5JUK3 1230 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 RABGAP1LQ5R372 815 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 TTC39BQ5VTQ0 682 aaPredicted RBP10.95□□□□□ -0.66
CD44-227ENST00000528086 RNF219Q5W0B1 726 aaPredicted RBP10.95□□□□□ -0.66
CD44-227ENST00000528086 ACAD10Q6JQN1 1059 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 CYP4V2Q6ZWL3 525 aaPredicted RBP10.95□□□□□ -0.66
CD44-227ENST00000528086 TFAP2DQ7Z6R9 452 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 MMAAQ8IVH4 418 aaKnown RBP10.95□□□□□ -0.66
CD44-227ENST00000528086 C12orf50Q8NA57 414 aaPredicted RBP10.95□□□□□ -0.66
CD44-227ENST00000528086 C3orf20Q8ND61 904 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 ANKRD20A12PQ8NF67 263 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 NUP58Q9BVL2 599 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 NAT10Q9H0A0 1025 aaKnown RBP10.95□□□□□ -0.66
CD44-227ENST00000528086 NEUROG2Q9H2A3 272 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 PABPC3Q9H361 631 aaKnown RBP10.95□□□□□ -0.66
CD44-227ENST00000528086 SUN2Q9UH99 717 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 VPS51Q9UID3 782 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 MYO6Q9UM54 1294 aa10.95□□□□□ -0.66
CD44-227ENST00000528086 TPRP12270 2363 aaKnown RBP10.95□□□□□ -0.66
CD44-227ENST00000528086 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.94□□□□□ -0.66
CD44-227ENST00000528086 EDDM13A0A1B0GTR0 161 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 TARSL2A2RTX5 802 aaKnown RBP10.94□□□□□ -0.66
CD44-227ENST00000528086 CCP110O43303 1012 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 ATMINO43313 823 aaPredicted RBP10.94□□□□□ -0.66
CD44-227ENST00000528086 PLEKP08567 350 aaPredicted RBP10.94□□□□□ -0.66
CD44-227ENST00000528086 SERPINF2P08697 491 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 KRT3P12035 628 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 SRCP12931 536 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 FERP16591 822 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 HOXD12P35452 270 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 ACVRL1P37023 503 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 NSFP46459 744 aaKnown RBP10.94□□□□□ -0.66
CD44-227ENST00000528086 SEMA3BQ13214 749 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 ZNF177Q13360 481 aaPredicted RBP10.94□□□□□ -0.66
CD44-227ENST00000528086 MAMLD1Q13495 774 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 DUOXA1Q1HG43 343 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 PPM1JQ5JR12 505 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 DCAF12L1Q5VU92 463 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 ZNF776Q68DI1 518 aaPredicted RBP10.94□□□□□ -0.66
CD44-227ENST00000528086 PLEKHA7Q6IQ23 1121 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 LAYNQ6UX15 382 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 LINGO4Q6UY18 593 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 STRADAQ7RTN6 431 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 SH2D3CQ8N5H7 860 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 ZNF557Q8N988 423 aaPredicted RBP10.94□□□□□ -0.66
CD44-227ENST00000528086 CADM4Q8NFZ8 388 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 FAM172AQ8WUF8 416 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 BIRC7Q96CA5 298 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 PEBP4Q96S96 227 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 OSBPL2Q9H1P3 480 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 HAUS4Q9H6D7 363 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 EIF2B4Q9UI10 523 aaKnown RBP10.94□□□□□ -0.66
CD44-227ENST00000528086 HS3ST2Q9Y278 367 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.94□□□□□ -0.66
CD44-227ENST00000528086 AKAP13Q12802 2813 aa10.94□□□□□ -0.66
CD44-227ENST00000528086 ARID1BQ8NFD5 2236 aaPredicted RBP10.93□□□□□ -0.66
CD44-227ENST00000528086 A0A1W2PP55 124 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 TYW5A2RUC4 315 aaKnown RBP10.93□□□□□ -0.66
CD44-227ENST00000528086 TMCO5BA8MYB1 307 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 FOXD2O60548 495 aaPredicted RBP10.93□□□□□ -0.66
CD44-227ENST00000528086 SRGAP2O75044 1071 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 LRIG2O94898 1065 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 CD59P13987 128 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 GPD1P21695 349 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 OXTRP30559 389 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 SLC8A1P32418 973 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 ZNF143P52747 638 aaPredicted RBP10.93□□□□□ -0.66
CD44-227ENST00000528086 GALCP54803 685 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 TAS2R38P59533 333 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 FAM193AP78312 1265 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 ARF5P84085 180 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 ZBTB16Q05516 673 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 SCAPQ12770 1279 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 DLG2Q15700 870 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 CA9Q16790 459 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 FIGNQ5HY92 759 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 Q6ZVU0 165 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 PIP4P1Q86T03 277 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 ZCCHC9Q8N567 271 aaKnown RBP10.93□□□□□ -0.66
CD44-227ENST00000528086 CHST14Q8NCH0 376 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 NTAN1Q96AB6 310 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms