RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 HERPUD2Q9BSE4 406 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 SYT11Q9BT88 431 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 IMPG2Q9BZV3 1241 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 QRSL1Q9H0R6 528 aaKnown RBP4.38□□□□□ -1.71
CD44-226ENST00000527889 SDCBP2Q9H190 292 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 XYLT2Q9H1B5 865 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 SEMA4AQ9H3S1 761 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 SMOC1Q9H4F8 434 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 EPB41L1Q9H4G0 881 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 ASB7Q9H672 318 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 EPHX3Q9H6B9 360 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 SMYD3Q9H7B4 428 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 FAM204AQ9H8W3 233 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 GOLGA2P5Q9HBQ8 144 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 ERVK-5Q9HDB9 667 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 PAK6Q9NQU5 681 aaPredicted RBP4.38□□□□□ -1.71
CD44-226ENST00000527889 STARD7Q9NQZ5 370 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 LUZP4Q9P127 313 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 USP36Q9P275 1121 aaKnown RBP4.38□□□□□ -1.71
CD44-226ENST00000527889 FNIP2Q9P278 1114 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 CACNG4Q9UBN1 327 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 TUBGCP4Q9UGJ1 667 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 EVLQ9UI08 416 aaPredicted RBP4.38□□□□□ -1.71
CD44-226ENST00000527889 MSRAQ9UJ68 235 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 NOCTQ9UK39 431 aaKnown RBP4.38□□□□□ -1.71
CD44-226ENST00000527889 TMCC3Q9ULS5 477 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 PADI3Q9ULW8 664 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 AGAP1Q9UPQ3 857 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 DMTF1Q9Y222 760 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 PCDHB2Q9Y5E7 798 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 IKBKGQ9Y6K9 419 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 NCOR1O75376 2440 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 NCANO14594 1321 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 COL4A6Q14031 1691 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 CHD7Q9P2D1 2997 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 ZNF292O60281 2723 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 SMIM28A0A1B0GU29 152 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 PRR19A6NJB7 356 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 H3BML4 177 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 PTGESO14684 152 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 THAP12O43422 761 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 NCK2O43639 380 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 KRT86O43790 486 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 PIP5K1CO60331 668 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 PQBP1O60828 265 aaKnown RBP4.37□□□□□ -1.71
CD44-226ENST00000527889 URI1O94763 535 aaPredicted RBP4.37□□□□□ -1.71
CD44-226ENST00000527889 TGFB1P01137 390 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 TFRCP02786 760 aaKnown RBP4.37□□□□□ -1.71
CD44-226ENST00000527889 H2AFZP0C0S5 128 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 SETSIPP0DME0 302 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 CKBP12277 381 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 CYP11B1P15538 503 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 ATF7P17544 494 aaPredicted RBP4.37□□□□□ -1.71
CD44-226ENST00000527889 TYRP1P17643 537 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 ACO1P21399 889 aaKnown RBP4.37□□□□□ -1.71
CD44-226ENST00000527889 ABCB4P21439 1286 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 TBXAS1P24557 533 aaPredicted RBP4.37□□□□□ -1.71
CD44-226ENST00000527889 IGFBP6P24592 240 aaPredicted RBP4.37□□□□□ -1.71
CD44-226ENST00000527889 ITGB8P26012 769 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 ANXA13P27216 316 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 HALP42357 657 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 PDE6CP51160 858 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 ZNF132P52740 706 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 MANFP55145 182 aaKnown RBP4.37□□□□□ -1.71
CD44-226ENST00000527889 OXCT1P55809 520 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 RBP5P82980 135 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 SLC20A2Q08357 652 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 KIF5AQ12840 1032 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 NAB2Q15742 525 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 SGSM1Q2NKQ1 1148 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 WDR72Q3MJ13 1102 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 CT83Q5H943 113 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 ZNF667Q5HYK9 610 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 TMEM31Q5JXX7 168 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 C1QTNF12Q5T7M4 302 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 ALKAL1Q6UXT8 129 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 H2AFVQ71UI9 128 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 ENOSF1Q7L5Y1 443 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 THAP5Q7Z6K1 395 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 PHLDB2Q86SQ0 1253 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 SUGP1Q8IWZ8 645 aaKnown RBP4.37□□□□□ -1.71
CD44-226ENST00000527889 CD302Q8IX05 232 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 SPACA3Q8IXA5 215 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 PRR18Q8N4B5 295 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 ANKRD42Q8N9B4 389 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 BEST2Q8NFU1 509 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 UHMK1Q8TAS1 419 aaKnown RBP4.37□□□□□ -1.71
CD44-226ENST00000527889 SHKBP1Q8TBC3 707 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 ERP27Q96DN0 273 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 ARHGEF26Q96DR7 871 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 MVB12AQ96EY5 273 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 TRMT2BQ96GJ1 504 aaKnown RBP4.37□□□□□ -1.71
CD44-226ENST00000527889 HSPA12BQ96MM6 686 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 GAD1Q99259 594 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 NAPGQ99747 312 aaPredicted RBP4.37□□□□□ -1.71
CD44-226ENST00000527889 ADAM2Q99965 735 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 TSGA10Q9BZW7 698 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 CD244Q9BZW8 370 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 GOLPH3Q9H4A6 298 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 RSAD1Q9HA92 442 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms