RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TRMT10BQ6PF06 316 aaKnown RBP11.91□□□□□ -0.5
SYNPO-204ENST00000519664 TRIM74Q86UV6 250 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 TRIM73Q86UV7 250 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 FAM13CQ8NE31 585 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 CLEC4CQ8WTT0 213 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 DDI1Q8WTU0 396 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 NKD2Q969F2 451 aaPredicted RBP11.91□□□□□ -0.5
SYNPO-204ENST00000519664 CSPG4P5Q96PW8 444 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 ALG9Q9H6U8 611 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 ITGB1BP2Q9UKP3 347 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 DSEQ9UL01 958 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 NRCAMQ92823 1304 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 RBP1P09455 135 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 CCDC166P0CW27 439 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 PPP3CCP48454 512 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 CDH13P55290 713 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 OASLQ15646 514 aaKnown RBP11.91□□□□□ -0.5
SYNPO-204ENST00000519664 SPANXN3Q5MJ09 141 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 VWA5B1Q5TIE3 1220 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 TAF2Q6P1X5 1199 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 TTC23LQ6PF05 361 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 SCIMPQ6UWF3 145 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 NT5DC4Q86YG4 428 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 TWNKQ96RR1 684 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 ZNF670Q9BS34 389 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 SENP6Q9GZR1 1112 aaPredicted RBP11.91□□□□□ -0.5
SYNPO-204ENST00000519664 POMKQ9H5K3 350 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 MINDY3Q9H8M7 445 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 RRAGCQ9HB90 399 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 SLC13A4Q9UKG4 626 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 MAGEB16A2A368 324 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 VPS26AO75436 327 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 TMEM63AO94886 807 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 CLPTM1O96005 669 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 MBL2P11226 248 aaPredicted RBP11.91□□□□□ -0.5
SYNPO-204ENST00000519664 IL1R2P27930 398 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 NDUFV1P49821 464 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 WDR4P57081 412 aaKnown RBP11.91□□□□□ -0.5
SYNPO-204ENST00000519664 GPR142Q7Z601 462 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 ADCK2Q7Z695 626 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 FAM162AQ96A26 154 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 DACH2Q96NX9 599 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 ACE2Q9BYF1 805 aaPredicted RBP11.91□□□□□ -0.5
SYNPO-204ENST00000519664 RGPD5Q99666 1765 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 PRPF4O43172 522 aaKnown RBP eCLIP11.9□□□□□ -0.5
SYNPO-204ENST00000519664 CLASP2O75122 1294 aaKnown RBP11.9□□□□□ -0.5
SYNPO-204ENST00000519664 FKBP6O75344 327 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 CCNB1P14635 433 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 LMO2P25791 158 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 XRCC4Q13426 336 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 ARHGEF7Q14155 803 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 POLD3Q15054 466 aaPredicted RBP11.9□□□□□ -0.5
SYNPO-204ENST00000519664 CCDC153Q494R4 210 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 LCLAT1Q6UWP7 414 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 ARMCX6Q7L4S7 300 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 TTC7BQ86TV6 843 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 GSTCDQ8NEC7 633 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 ERLEC1Q96DZ1 483 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 KLHL5Q96PQ7 755 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 TRAPPC9Q96Q05 1148 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 ACOX2Q99424 681 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 RIC8BQ9NVN3 520 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 SLC27A5Q9Y2P5 690 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 TCRBV7S3A2A0A539 114 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 INPP4BO15327 924 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 TREHO43280 583 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 MSI1O43347 362 aaKnown RBP11.9□□□□□ -0.5
SYNPO-204ENST00000519664 ZNF189O75820 626 aaPredicted RBP11.9□□□□□ -0.5
SYNPO-204ENST00000519664 MYO1DO94832 1006 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 ALDH2P05091 517 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 RHOCP08134 193 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 PSMC3P17980 439 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 CD86P42081 329 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 PPIL2Q13356 520 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 FASTKQ14296 549 aaKnown RBP11.9□□□□□ -0.5
SYNPO-204ENST00000519664 NR6A1Q15406 480 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 CA9Q16790 459 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 TSHZ1Q6ZSZ6 1077 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 NLGN2Q8NFZ4 835 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 TBC1D23Q9NUY8 699 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 TRHDEQ9UKU6 1024 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 ST3GAL5Q9UNP4 418 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 FARP1Q9Y4F1 1045 aaPredicted RBP11.9□□□□□ -0.5
SYNPO-204ENST00000519664 USP1O94782 785 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 NPY2RP49146 381 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 DDR2Q16832 855 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 PFKFB4Q16877 469 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 WLSQ5T9L3 541 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 C16orf59Q7L2K0 433 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 OR52K2Q8NGK3 314 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 MFSD3Q96ES6 412 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 TBL1YQ9BQ87 522 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 COLEC11Q9BWP8 271 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 NIFKQ9BYG3 293 aaKnown RBP11.9□□□□□ -0.5
SYNPO-204ENST00000519664 LHX5Q9H2C1 402 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 TMEM59LQ9UK28 342 aa11.9□□□□□ -0.5
SYNPO-204ENST00000519664 OR4Q2P0C623 313 aa11.89□□□□□ -0.51
SYNPO-204ENST00000519664 SP100P23497 879 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-204ENST00000519664 PSMA4P25789 261 aaKnown RBP11.89□□□□□ -0.51
SYNPO-204ENST00000519664 CD52P31358 61 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms