RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 PSMB7Q99436 277 aa11.81□□□□□ -0.52
VCAN-212ENST00000515397 NUP58Q9BVL2 599 aa11.81□□□□□ -0.52
VCAN-212ENST00000515397 GTPBP2Q9BX10 602 aaKnown RBP11.81□□□□□ -0.52
VCAN-212ENST00000515397 TRIM7Q9C029 511 aa11.81□□□□□ -0.52
VCAN-212ENST00000515397 TTYH3Q9C0H2 523 aa11.81□□□□□ -0.52
VCAN-212ENST00000515397 NEUROG2Q9H2A3 272 aa11.81□□□□□ -0.52
VCAN-212ENST00000515397 NDFIP2Q9NV92 336 aa11.81□□□□□ -0.52
VCAN-212ENST00000515397 FBXL12Q9NXK8 326 aa11.81□□□□□ -0.52
VCAN-212ENST00000515397 EIF2B4Q9UI10 523 aaKnown RBP11.81□□□□□ -0.52
VCAN-212ENST00000515397 EDDM13A0A1B0GTR0 161 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 A0A1W2PP55 124 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 MEI4A8MW99 385 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 CCP110O43303 1012 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 SMAD6O43541 496 aaKnown RBP11.8□□□□□ -0.52
VCAN-212ENST00000515397 IL1BP01584 269 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 FTLP02792 175 aaPredicted RBP11.8□□□□□ -0.52
VCAN-212ENST00000515397 SRPRAP08240 638 aaKnown RBP11.8□□□□□ -0.52
VCAN-212ENST00000515397 CCDC172P0C7W6 258 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 ENGP17813 658 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 OR1E1P30953 314 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 SLC8A1P32418 973 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 ACVRL1P37023 503 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 PLK1P53350 603 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 TPM4P67936 248 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 C1QBPQ07021 282 aaKnown RBP11.8□□□□□ -0.52
VCAN-212ENST00000515397 KLHL30Q0D2K2 578 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 SLC12A1Q13621 1099 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 CST6Q15828 149 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 C5orf22Q49AR2 442 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 SPDYCQ5MJ68 293 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 TTC39BQ5VTQ0 682 aaPredicted RBP11.8□□□□□ -0.52
VCAN-212ENST00000515397 IL31Q6EBC2 164 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 DCUN1D2Q6PH85 259 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 LEKR1Q6ZMV7 388 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 ARCQ7LC44 396 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 NETO2Q8NC67 525 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 RNF214Q8ND24 703 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 C3orf20Q8ND61 904 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 CENPIQ92674 756 aaPredicted RBP11.8□□□□□ -0.52
VCAN-212ENST00000515397 C1orf74Q96LT6 269 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 RTKNQ9BST9 563 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 NUSAP1Q9BXS6 441 aaKnown RBP11.8□□□□□ -0.52
VCAN-212ENST00000515397 RSPH9Q9H1X1 276 aaPredicted RBP11.8□□□□□ -0.52
VCAN-212ENST00000515397 AIPL1Q9NZN9 384 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 OR12D3Q9UGF7 316 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 DNAI1Q9UI46 699 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 SARDHQ9UL12 918 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 TBC1D30Q9Y2I9 924 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 PAXBP1Q9Y5B6 917 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 CACNA1EQ15878 2313 aa11.8□□□□□ -0.52
VCAN-212ENST00000515397 CKAP5Q14008 2032 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 METTL12A8MUP2 240 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 RNF103O00237 685 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 CBX4O00257 560 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 TM4SF5O14894 197 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 GIPC1O14908 333 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 RNASEH1O60930 286 aaKnown RBP11.79□□□□□ -0.52
VCAN-212ENST00000515397 RNASEH2AO75792 299 aaKnown RBP11.79□□□□□ -0.52
VCAN-212ENST00000515397 FSBPO95073 299 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 PLEKP08567 350 aaPredicted RBP11.79□□□□□ -0.52
VCAN-212ENST00000515397 OXTRP30559 389 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 NNMTP40261 264 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 PBX1P40424 430 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 PTPN9P43378 593 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 SULT2A1Q06520 285 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 MAMLD1Q13495 774 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 DUOXA1Q1HG43 343 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 SKOR2Q2VWA4 1001 aaPredicted RBP11.79□□□□□ -0.52
VCAN-212ENST00000515397 PPM1JQ5JR12 505 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 PPP1R15BQ5SWA1 713 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 SYCP2LQ5T4T6 812 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 LAYNQ6UX15 382 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.79□□□□□ -0.52
VCAN-212ENST00000515397 Q6ZVU0 165 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 HDDC3Q8N4P3 179 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 ZCCHC9Q8N567 271 aaKnown RBP11.79□□□□□ -0.52
VCAN-212ENST00000515397 AADATQ8N5Z0 425 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 ATP11CQ8NB49 1132 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 FOXJ1Q92949 421 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.79□□□□□ -0.52
VCAN-212ENST00000515397 ZYG11BQ9C0D3 744 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 BTBD1Q9H0C5 482 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 TNKS2Q9H2K2 1166 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 PABPC3Q9H361 631 aaKnown RBP11.79□□□□□ -0.52
VCAN-212ENST00000515397 GPATCH2LQ9NWQ4 482 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 MYO1AQ9UBC5 1043 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 VPS51Q9UID3 782 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 MYO6Q9UM54 1294 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 SLC6A14Q9UN76 642 aa11.79□□□□□ -0.52
VCAN-212ENST00000515397 ASCC3Q8N3C0 2202 aaKnown RBP11.78□□□□□ -0.52
VCAN-212ENST00000515397 IGLV3-10A0A075B6K4 115 aa11.78□□□□□ -0.52
VCAN-212ENST00000515397 TARSL2A2RTX5 802 aaKnown RBP11.78□□□□□ -0.52
VCAN-212ENST00000515397 KCNK3O14649 394 aa11.78□□□□□ -0.52
VCAN-212ENST00000515397 LRIG2O94898 1065 aa11.78□□□□□ -0.52
VCAN-212ENST00000515397 SEMA4FO95754 770 aa11.78□□□□□ -0.52
VCAN-212ENST00000515397 IGLV3-19P01714 112 aa11.78□□□□□ -0.52
VCAN-212ENST00000515397 SERPINF2P08697 491 aa11.78□□□□□ -0.52
VCAN-212ENST00000515397 SRCP12931 536 aa11.78□□□□□ -0.52
VCAN-212ENST00000515397 PTMSP20962 102 aa11.78□□□□□ -0.52
VCAN-212ENST00000515397 SDHBP21912 280 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms