RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 STRA6Q9BX79 667 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC4A5Q9BY07 1137 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 ULBP1Q9BZM6 244 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 DNAJC28Q9NX36 388 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 HES2Q9Y543 173 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 C2P06681 752 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 CSE1LP55060 971 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 NUP107P57740 925 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 FOXD4Q12950 439 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 CDC16Q13042 620 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 TMTC4Q5T4D3 741 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 LIPMQ5VYY2 423 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 PMF1Q6P1K2 205 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 EFL1Q7Z2Z2 1120 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 DENND1AQ8TEH3 1009 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 DGCR14Q96DF8 476 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 TBL1YQ9BQ87 522 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 EBF3Q9H4W6 596 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF395Q9H8N7 513 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 MYH15Q9Y2K3 1946 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 NUP98P52948 1817 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 DCAF8L1A6NGE4 600 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 GCATO75600 419 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 RECQL4O94761 1208 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 PIGRP01833 764 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 PEX2P28328 305 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 MRPS26Q9BYN8 205 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC15A5A6NIM6 579 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 BNIP3LO60238 219 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 B3GAT3O94766 335 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 ERCC2P18074 760 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 ARF4P18085 180 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 MPSTP25325 297 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 DNAJB2P25686 324 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 MATKP42679 507 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 LHX1P48742 406 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 NR1H2P55055 460 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 ADARP55265 1226 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 DCTN2Q13561 401 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 EML3Q32P44 896 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 GALNT15Q8N3T1 639 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 TSPAN14Q8NG11 270 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC7A6OSQ96CW6 309 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 DCUN1D1Q96GG9 259 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 C17orf80Q9BSJ5 609 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 NT5MQ9NPB1 228 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 RNF112Q9ULX5 631 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 MRPL42Q9Y6G3 142 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 MYH13Q9UKX3 1938 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 KDM4FA0A1W2PPD8 638 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 KLRG2A4D1S0 409 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 GPR25O00155 361 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 TRIM38O00635 465 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 SOAT2O75908 522 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 ESRRBO95718 433 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 IDH3AP50213 366 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 PLIN5Q00G26 463 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC25A11Q02978 314 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC18A2Q05940 514 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 PPP1R15BQ5SWA1 713 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF410Q86VK4 478 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 SPATA6LQ8N4H0 392 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 TNIP2Q8NFZ5 429 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 MCRS1Q96EZ8 462 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 QKIQ96PU8 341 aaKnown RBP eCLIP8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 KCTD15Q96SI1 283 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 TKTL2Q9H0I9 626 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 ACSS2Q9NR19 701 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 TMEM216Q9P0N5 145 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 KIF17Q9P2E2 1029 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 PTPRJQ12913 1337 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 KANSL1LA0AUZ9 987 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 NCF1BA6NI72 391 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 NCF1CA8MVU1 366 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 MDM4O15151 490 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 PLSCR1O15162 318 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 CLOCKO15516 846 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 BAIAP3O94812 1187 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 USP17L7P0C7H9 530 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 NCF1P14598 390 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 LRPAP1P30533 357 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 GTF2A2P52657 109 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 POU4F1Q01851 419 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 C16orf72Q14CZ0 275 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 CA9Q16790 459 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 PCID2Q5JVF3 399 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 ANGPTL8Q6UXH0 198 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 EFHBQ8N7U6 833 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 LENG8Q96PV6 779 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 TBC1D13Q9NVG8 400 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 RRN3Q9NYV6 651 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 RNF181Q9P0P0 153 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 XPR1Q9UBH6 696 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 USP54Q70EL1 1684 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF839A8K0R7 811 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 INPP4BO15327 924 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 LGR5O75473 907 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 CABYRO75952 493 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 METTL18O95568 372 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms