RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ITGB8P26012 769 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 VEGFCP49767 419 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 TAF6P49848 677 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 ADPRHP54922 357 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 ARL13AQ5H913 290 aaPredicted RBP3.12□□□□□ -1.91
NUP54-208ENST00000508604 NXNQ6DKJ4 435 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 TCEAL8Q8IYN2 117 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 ADGRG7Q96K78 797 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 ACTR5Q9H9F9 607 aaPredicted RBP3.12□□□□□ -1.91
NUP54-208ENST00000508604 SDF2L1Q9HCN8 221 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 GOLGA6AQ9NYA3 693 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 DDX20Q9UHI6 824 aaKnown RBP3.12□□□□□ -1.91
NUP54-208ENST00000508604 FBXO4Q9UKT5 387 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 PCDHGB6Q9Y5F9 930 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 FRMPD2Q68DX3 1309 aaPredicted RBP3.12□□□□□ -1.91
NUP54-208ENST00000508604 TRBV5-7A0A0A0MS05 114 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 LINC01553A4QN01 128 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 ITGA5P08648 1049 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 MYZAPP0CAP1 466 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 IGFBP2P18065 325 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 GRK5P34947 590 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 PEX5P50542 639 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 TMPRSS3P57727 454 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 HNF4GQ14541 408 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 AAK1Q2M2I8 961 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 PLEKHO1Q53GL0 409 aaPredicted RBP3.11□□□□□ -1.91
NUP54-208ENST00000508604 MDGA2Q7Z553 956 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 EXD3Q8N9H8 876 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 LILRB1Q8NHL6 650 aaPredicted RBP3.11□□□□□ -1.91
NUP54-208ENST00000508604 KLHL31Q9H511 634 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 HELLSQ9NRZ9 838 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 CA14Q9ULX7 337 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 ZBTB1Q9Y2K1 713 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 HMCN1Q96RW7 5635 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 SAA2-SAA4A0A096LPE2 208 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 AMD1P17707 334 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 GNLYP22749 145 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 C21orf33P30042 268 aaPredicted RBP3.11□□□□□ -1.91
NUP54-208ENST00000508604 CYP2J2P51589 502 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 TAS2R50P59544 299 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 IGBP1P78318 339 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 SNTA1Q13424 505 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 PPP2R5AQ15172 486 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 MAPKAPK3Q16644 382 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 STPG1Q5TH74 334 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 MEX3BQ6ZN04 569 aaKnown RBP3.11□□□□□ -1.91
NUP54-208ENST00000508604 MON1BQ7L1V2 547 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 SPEM1Q8N4L4 309 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 HORMAD2Q8N7B1 307 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 MIGA1Q8NAN2 632 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 POC1AQ8NBT0 407 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 GPATCH3Q96I76 525 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 REXO5Q96IC2 774 aaKnown RBP3.11□□□□□ -1.91
NUP54-208ENST00000508604 UHRF2Q96PU4 802 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 PKP4Q99569 1192 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 APOL5Q9BWW9 433 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.11□□□□□ -1.91
NUP54-208ENST00000508604 MYO1AQ9UBC5 1043 aa3.11□□□□□ -1.91
NUP54-208ENST00000508604 POM121BA6NF01 834 aa3.1□□□□□ -1.91
NUP54-208ENST00000508604 ITM2AO43736 263 aa3.1□□□□□ -1.91
NUP54-208ENST00000508604 ANOS1P23352 680 aa3.1□□□□□ -1.91
NUP54-208ENST00000508604 PPP3CCP48454 512 aa3.1□□□□□ -1.91
NUP54-208ENST00000508604 GRSF1Q12849 480 aaKnown RBP eCLIP3.1□□□□□ -1.91
NUP54-208ENST00000508604 ODR4Q5SWX8 454 aa3.1□□□□□ -1.91
NUP54-208ENST00000508604 KLHDC7AQ5VTJ3 777 aa3.1□□□□□ -1.91
NUP54-208ENST00000508604 RETSATQ6NUM9 610 aa3.1□□□□□ -1.91
NUP54-208ENST00000508604 ANKS1BQ7Z6G8 1248 aa3.1□□□□□ -1.91
NUP54-208ENST00000508604 DBF4BQ8NFT6 615 aa3.1□□□□□ -1.91
NUP54-208ENST00000508604 SLC25A33Q9BSK2 321 aa3.1□□□□□ -1.91
NUP54-208ENST00000508604 IL25Q9H293 177 aa3.1□□□□□ -1.91
NUP54-208ENST00000508604 SLC12A4Q9UP95 1085 aa3.1□□□□□ -1.91
NUP54-208ENST00000508604 CYP3A7-CYP3A51PA0A087WV96 503 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 TBC1D3DA0A087WVF3 549 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 TBC1D3IA0A087WXS9 549 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 TBC1D3EA0A087X179 549 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 TBC1D3KA0A087X1G2 549 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 TBC1D3BA6NDS4 549 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 TBC1D3FA6NER0 549 aaPredicted RBP3.09□□□□□ -1.91
NUP54-208ENST00000508604 TBC1D3LB9A6J9 549 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 CLGNO14967 610 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 SCGB1D2O95969 90 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 TBC1D3HP0C7X1 549 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 CYP3A7P24462 503 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 CDH12P55289 794 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 TRAF3Q13114 568 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 GRM3Q14832 879 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 ZNF569Q5MCW4 686 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 TBC1D3GQ6DHY5 549 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 TBC1D3CQ6IPX1 549 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 TMEM71Q6P5X7 295 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 TBC1D3Q8IZP1 549 aaPredicted RBP3.09□□□□□ -1.91
NUP54-208ENST00000508604 CEP76Q8TAP6 659 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 STAG1Q8WVM7 1258 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 IL17FQ96PD4 163 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 TMEM120AQ9BXJ8 343 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 RGL1Q9NZL6 768 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 MALT1Q9UDY8 824 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 NFU1Q9UMS0 254 aa3.09□□□□□ -1.91
NUP54-208ENST00000508604 IGLV5-52A0A0A0MRZ9 124 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 IGHV4-28A0A0C4DH34 117 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms