RNA–Protein interactions for RNA: ENST00000504807.5

DDX41-204, Transcript of DEAD-box helicase 41, human

TSL 2

Gene DDX41, Length 794 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-204	ENST00000504807	SLC6A3	Q01959	620 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	SEMG2	Q02383	582 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	NME3	Q13232	169 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	RAPGEF1	Q13905	1077 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	WDR45B	Q5MNZ6	344 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	SYCP2L	Q5T4T6	812 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	TAF3	Q5VWG9	929 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	C11orf57	Q6ZUT1	292 aa	Predicted RBP	13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	SLC26A9	Q7LBE3	791 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	STK40	Q8N2I9	435 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	FRS2	Q8WU20	508 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	SLC20A1	Q8WUM9	679 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	PTPRN2	Q92932	1015 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	NPY6R	Q99463	290 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	PABPC3	Q9H361	631 aa	Known RBP	13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	TM9SF3	Q9HD45	589 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	ASNSD1	Q9NWL6	643 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	OR51B4	Q9Y5P0	310 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	ITIH6	Q6UXX5	1313 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807	MYO9A	B2RTY4	2548 aa		13.55	□□□□□ -0.24
DDX41-204	ENST00000504807		A0A1W2PP55	124 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	BCAT2	O15382	392 aa	Predicted RBP	13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	RRP8	O43159	456 aa	Known RBP	13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	HSF2BP	O75031	334 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	PAGE1	O75459	146 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	FSBP	O95073	299 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	SEMA4F	O95754	770 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	MME	P08473	750 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	UCHL3	P15374	230 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	FLT3	P36888	993 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	ECT2L	Q008S8	904 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	PTK2	Q05397	1052 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	AUH	Q13825	339 aa	Known RBP	13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	ARID5B	Q14865	1188 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	KIF19	Q2TAC6	998 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	ALF	Q53S48	1182 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	TCP11X2	Q5H9J9	407 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	CDKAL1	Q5VV42	579 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	ZNF776	Q68DI1	518 aa	Predicted RBP	13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	XYLT1	Q86Y38	959 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	MMAA	Q8IVH4	418 aa	Known RBP	13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	ZNF397	Q8NF99	534 aa	Predicted RBP	13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	SNX19	Q92543	992 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	NT5C3B	Q969T7	300 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	NEUROG2	Q9H2A3	272 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	NOCT	Q9UK39	431 aa	Known RBP	13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	SARDH	Q9UL12	918 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	VANGL2	Q9ULK5	521 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	BTBD3	Q9Y2F9	522 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	NFE2L3	Q9Y4A8	694 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	SNX11	Q9Y5W9	270 aa		13.54	□□□□□ -0.24
DDX41-204	ENST00000504807	TMEM131	Q92545	1883 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807		F5H5T6	163 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807		F8VZ95	297 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807		M0QYT0	321 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	DKK1	O94907	266 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	GJB6	O95452	261 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	ASL	P04424	464 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	WNT1	P04628	370 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	GLI1	P08151	1106 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	CHRNB2	P17787	502 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	DRD3	P35462	400 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	RNASE9	P60153	205 aa	Known RBP	13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	CXADR	P78310	365 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	CDK17	Q00537	523 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	CST6	Q15828	149 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	TPD52L1	Q16890	204 aa	Predicted RBP	13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	HLA-B	Q31612	363 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	C5orf22	Q49AR2	442 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	EFHC1	Q5JVL4	640 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	RBM43	Q6ZSC3	357 aa	Known RBP	13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	BNIPL	Q7Z465	357 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	ATP6V0D2	Q8N8Y2	350 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	RHBDD1	Q8TEB9	315 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	TBCB	Q99426	244 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	PSMB7	Q99436	277 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	DDX50	Q9BQ39	737 aa	Known RBP	13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	MAGEB5	Q9BZ81	275 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	SEMA4C	Q9C0C4	833 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	BTBD1	Q9H0C5	482 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	HSD3B7	Q9H2F3	369 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	GAREM1	Q9H706	876 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	CAAP1	Q9H8G2	361 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	SUSD2	Q9UGT4	822 aa		13.53	□□□□□ -0.24
DDX41-204	ENST00000504807	TEP1	Q99973	2627 aa	Known RBP	13.53	□□□□□ -0.24
DDX41-204	ENST00000504807		B8ZZF3	427 aa		13.52	□□□□□ -0.25
DDX41-204	ENST00000504807	SLC28A2	O43868	658 aa		13.52	□□□□□ -0.25
DDX41-204	ENST00000504807	MT-CO1	P00395	513 aa		13.52	□□□□□ -0.25
DDX41-204	ENST00000504807	DNTT	P04053	509 aa		13.52	□□□□□ -0.25
DDX41-204	ENST00000504807	SRPRA	P08240	638 aa	Known RBP	13.52	□□□□□ -0.25
DDX41-204	ENST00000504807	GNS	P15586	552 aa		13.52	□□□□□ -0.25
DDX41-204	ENST00000504807	CCR1	P32246	355 aa		13.52	□□□□□ -0.25
DDX41-204	ENST00000504807	KRT9	P35527	623 aa		13.52	□□□□□ -0.25
DDX41-204	ENST00000504807	MATK	P42679	507 aa		13.52	□□□□□ -0.25
DDX41-204	ENST00000504807	GABRB2	P47870	512 aa		13.52	□□□□□ -0.25
DDX41-204	ENST00000504807	PSMD8	P48556	350 aa		13.52	□□□□□ -0.25
DDX41-204	ENST00000504807	CXCR3	P49682	368 aa		13.52	□□□□□ -0.25
DDX41-204	ENST00000504807	PLK1	P53350	603 aa		13.52	□□□□□ -0.25
DDX41-204	ENST00000504807	GALC	P54803	685 aa		13.52	□□□□□ -0.25

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