RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 USP9XQ93008 2570 aaPredicted RBP17■□□□□ 0.31
VIM-208ENST00000497849 K7ESM1 405 aa17■□□□□ 0.31
VIM-208ENST00000497849 SPTLC2O15270 562 aa17■□□□□ 0.31
VIM-208ENST00000497849 POLR2DO15514 142 aaKnown RBP17■□□□□ 0.31
VIM-208ENST00000497849 RNGTTO60942 597 aaKnown RBP17■□□□□ 0.31
VIM-208ENST00000497849 GABBR2O75899 941 aa17■□□□□ 0.31
VIM-208ENST00000497849 F13A1P00488 732 aa17■□□□□ 0.31
VIM-208ENST00000497849 ITGB6P18564 788 aa17■□□□□ 0.31
VIM-208ENST00000497849 AFMP43652 599 aa17■□□□□ 0.31
VIM-208ENST00000497849 NUMBP49757 651 aa17■□□□□ 0.31
VIM-208ENST00000497849 TBX4P57082 545 aa17■□□□□ 0.31
VIM-208ENST00000497849 TAS2R38P59533 333 aa17■□□□□ 0.31
VIM-208ENST00000497849 ZSCAN23Q3MJ62 389 aa17■□□□□ 0.31
VIM-208ENST00000497849 MS4A13Q5J8X5 152 aa17■□□□□ 0.31
VIM-208ENST00000497849 ATG14Q6ZNE5 492 aa17■□□□□ 0.31
VIM-208ENST00000497849 SCML4Q8N228 414 aa17■□□□□ 0.31
VIM-208ENST00000497849 FRS2Q8WU20 508 aa17■□□□□ 0.31
VIM-208ENST00000497849 SPAG5Q96R06 1193 aa17■□□□□ 0.31
VIM-208ENST00000497849 MMRN2Q9H8L6 949 aa17■□□□□ 0.31
VIM-208ENST00000497849 USP29Q9HBJ7 922 aa17■□□□□ 0.31
VIM-208ENST00000497849 CNGB3Q9NQW8 809 aa17■□□□□ 0.31
VIM-208ENST00000497849 FRMD4BQ9Y2L6 1034 aa17■□□□□ 0.31
VIM-208ENST00000497849 CEP83Q9Y592 693 aa17■□□□□ 0.31
VIM-208ENST00000497849 TYW5A2RUC4 315 aaKnown RBP16.99■□□□□ 0.31
VIM-208ENST00000497849 SCAMP1O15126 338 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 MAPK13O15264 365 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 SUV39H1O43463 412 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 PPP6R2O75170 966 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 NEBLO76041 1014 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 MOCS3O95396 460 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 NTRK1P04629 796 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 ALPPL2P10696 532 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 PRLRP16471 622 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 DUSP3P51452 185 aaPredicted RBP16.99■□□□□ 0.31
VIM-208ENST00000497849 BST2Q10589 180 aaKnown RBP16.99■□□□□ 0.31
VIM-208ENST00000497849 SGO2Q562F6 1265 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 DCAF6Q58WW2 860 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 RNF219Q5W0B1 726 aaPredicted RBP16.99■□□□□ 0.31
VIM-208ENST00000497849 ZNF574Q6ZN55 896 aaPredicted RBP16.99■□□□□ 0.31
VIM-208ENST00000497849 CLEC14AQ86T13 490 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 GRAMD1CQ8IYS0 662 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 SLC22A18ASQ8N1D0 253 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 SIX6OS1Q8N1H7 587 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 TTC39CQ8N584 583 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 CCDC150Q8NCX0 1101 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 OR13H1Q8NG92 308 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 UBA3Q8TBC4 463 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 KCTD13Q8WZ19 329 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 GRAMD1AQ96CP6 724 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 FCRL2Q96LA5 508 aaPredicted RBP16.99■□□□□ 0.31
VIM-208ENST00000497849 NOX5Q96PH1 765 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 CCNL2Q96S94 520 aaPredicted RBP16.99■□□□□ 0.31
VIM-208ENST00000497849 ANKMY1Q9P2S6 941 aa16.99■□□□□ 0.31
VIM-208ENST00000497849 NBPF19A0A087WUL8 3843 aa16.98■□□□□ 0.31
VIM-208ENST00000497849 SLC31A1O15431 190 aa16.98■□□□□ 0.31
VIM-208ENST00000497849 PDIA4P13667 645 aaKnown RBP16.98■□□□□ 0.31
VIM-208ENST00000497849 LCP1P13796 627 aa16.98■□□□□ 0.31
VIM-208ENST00000497849 ZNF542PQ5EBM4 170 aa16.98■□□□□ 0.31
VIM-208ENST00000497849 CCDC117Q8IWD4 279 aaPredicted RBP16.98■□□□□ 0.31
VIM-208ENST00000497849 KLK6Q92876 244 aa16.98■□□□□ 0.31
VIM-208ENST00000497849 FAXDC2Q96IV6 333 aa16.98■□□□□ 0.31
VIM-208ENST00000497849 DDX50Q9BQ39 737 aaKnown RBP16.98■□□□□ 0.31
VIM-208ENST00000497849 CALN1Q9BXU9 219 aa16.98■□□□□ 0.31
VIM-208ENST00000497849 TMEM8AQ9HCN3 771 aa16.98■□□□□ 0.31
VIM-208ENST00000497849 FZD3Q9NPG1 666 aa16.98■□□□□ 0.31
VIM-208ENST00000497849 PPM1HQ9ULR3 514 aa16.98■□□□□ 0.31
VIM-208ENST00000497849 NEMP2A6NFY4 417 aa16.97■□□□□ 0.31
VIM-208ENST00000497849 CASC3O15234 703 aaKnown RBP16.97■□□□□ 0.31
VIM-208ENST00000497849 CDKN3Q16667 212 aa16.97■□□□□ 0.31
VIM-208ENST00000497849 GUSBP11Q6P575 273 aa16.97■□□□□ 0.31
VIM-208ENST00000497849 FOXR1Q6PIV2 292 aa16.97■□□□□ 0.31
VIM-208ENST00000497849 INTS8Q75QN2 995 aaKnown RBP16.97■□□□□ 0.31
VIM-208ENST00000497849 ARRDC3Q96B67 414 aa16.97■□□□□ 0.31
VIM-208ENST00000497849 DUSP23Q9BVJ7 150 aa16.97■□□□□ 0.31
VIM-208ENST00000497849 ZSCAN16Q9H4T2 348 aaPredicted RBP16.97■□□□□ 0.31
VIM-208ENST00000497849 PREBQ9HCU5 417 aa16.97■□□□□ 0.31
VIM-208ENST00000497849 XPO7Q9UIA9 1087 aaKnown RBP16.97■□□□□ 0.31
VIM-208ENST00000497849 ATXN7L1Q9ULK2 861 aaPredicted RBP16.97■□□□□ 0.31
VIM-208ENST00000497849 TRAF3IP3Q9Y228 551 aa16.97■□□□□ 0.31
VIM-208ENST00000497849 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.96■□□□□ 0.31
VIM-208ENST00000497849 A0A1W2PQU0 124 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 PIK3R2O00459 728 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 CUTAO60888 179 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 TNFSF15O95150 251 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 FYNP06241 537 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 NNMTP40261 264 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 PDX1P52945 283 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 CLDN2P57739 230 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 ZNF177Q13360 481 aaPredicted RBP16.96■□□□□ 0.31
VIM-208ENST00000497849 FAM46CQ5VWP2 391 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 KRT39Q6A163 491 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 CRTC1Q6UUV9 634 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 XKR5Q6UX68 686 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 GCNT7Q6ZNI0 430 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 RBM44Q6ZP01 1051 aaKnown RBP16.96■□□□□ 0.31
VIM-208ENST00000497849 EFL1Q7Z2Z2 1120 aaKnown RBP16.96■□□□□ 0.31
VIM-208ENST00000497849 ARL14Q8N4G2 192 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 WDR36Q8NI36 951 aaKnown RBP16.96■□□□□ 0.31
VIM-208ENST00000497849 CLEC4CQ8WTT0 213 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 OR8D1Q8WZ84 308 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms