RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 GDF3Q9NR23 364 aa22.74■■□□□ 1.23
HDDC3-203ENST00000494993 RAXQ9Y2V3 346 aa22.74■■□□□ 1.23
HDDC3-203ENST00000494993 GTF3C3Q9Y5Q9 886 aa22.74■■□□□ 1.23
HDDC3-203ENST00000494993 TBC1D3DA0A087WVF3 549 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 TBC1D3IA0A087WXS9 549 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 TBC1D3EA0A087X179 549 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 TBC1D3KA0A087X1G2 549 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 FAM149AA5PLN7 773 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 TBC1D3FA6NER0 549 aaPredicted RBP22.73■■□□□ 1.23
HDDC3-203ENST00000494993 TRABD2BA6NFA1 517 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 TBC1D3LB9A6J9 549 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 YKT6O15498 198 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 LATO43561 262 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 GRAP2O75791 330 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 ITGAVP06756 1048 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 TBC1D3HP0C7X1 549 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 METAP1P53582 386 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 COL9A2Q14055 689 aaPredicted RBP22.73■■□□□ 1.23
HDDC3-203ENST00000494993 SLC45A4Q5BKX6 768 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 TBC1D3GQ6DHY5 549 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 TBC1D3CQ6IPX1 549 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP22.73■■□□□ 1.23
HDDC3-203ENST00000494993 FAM183BPQ6ZVS7 135 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 TBC1D3Q8IZP1 549 aaPredicted RBP22.73■■□□□ 1.23
HDDC3-203ENST00000494993 SAP25Q8TEE9 199 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 OR8D1Q8WZ84 308 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 ALG14Q96F25 216 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 PPP1R9BQ96SB3 815 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 SLC25A13Q9UJS0 675 aa22.73■■□□□ 1.23
HDDC3-203ENST00000494993 TDRD6O60522 2096 aaKnown RBP22.72■■□□□ 1.23
HDDC3-203ENST00000494993 GTPBP10A4D1E9 387 aaKnown RBP22.72■■□□□ 1.23
HDDC3-203ENST00000494993 ENC1O14682 589 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 IRAK1P51617 712 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 NXPH1P58417 271 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 MTA1Q13330 715 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 AUHQ13825 339 aaKnown RBP22.72■■□□□ 1.23
HDDC3-203ENST00000494993 EXOC3L4Q17RC7 722 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 COL28A1Q2UY09 1125 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 OR6B2Q6IFH4 312 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 NAPEPLDQ6IQ20 393 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 OLFML1Q6UWY5 402 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 C11orf57Q6ZUT1 292 aaPredicted RBP22.72■■□□□ 1.23
HDDC3-203ENST00000494993 DSG4Q86SJ6 1040 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 C1orf131Q8NDD1 294 aaKnown RBP22.72■■□□□ 1.23
HDDC3-203ENST00000494993 OR52K2Q8NGK3 314 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 NOX5Q96PH1 765 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 FEM1AQ9BSK4 669 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 KDM4CQ9H3R0 1056 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 KIAA1468Q9P260 1216 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 VANGL2Q9ULK5 521 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 PCDHGA1Q9Y5H4 931 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 HS3ST4Q9Y661 456 aa22.72■■□□□ 1.23
HDDC3-203ENST00000494993 TLR4O00206 839 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 PLK4O00444 970 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 SLC7A4O43246 635 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 ATP9BO43861 1147 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 DAB1O75553 588 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 ERBB2P04626 1255 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 PON1P27169 355 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 EPHA8P29322 1005 aaPredicted RBP22.71■■□□□ 1.23
HDDC3-203ENST00000494993 ARRB1P49407 418 aaPredicted RBP22.71■■□□□ 1.23
HDDC3-203ENST00000494993 PTK2Q05397 1052 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 CYP4F3Q08477 520 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 NME3Q13232 169 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 ACCSLQ4AC99 568 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 FAM46CQ5VWP2 391 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 SMYD5Q6GMV2 418 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 PDCD7Q8N8D1 485 aaKnown RBP22.71■■□□□ 1.23
HDDC3-203ENST00000494993 CNDP2Q96KP4 475 aaKnown RBP22.71■■□□□ 1.23
HDDC3-203ENST00000494993 SARDHQ9UL12 918 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 OR51B4Q9Y5P0 310 aa22.71■■□□□ 1.23
HDDC3-203ENST00000494993 FASNP49327 2511 aaKnown RBP22.7■■□□□ 1.22
HDDC3-203ENST00000494993 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP22.7■■□□□ 1.22
HDDC3-203ENST00000494993 CBX4O00257 560 aa22.7■■□□□ 1.22
HDDC3-203ENST00000494993 ALOX15BO15296 676 aa22.7■■□□□ 1.22
HDDC3-203ENST00000494993 PLRG1O43660 514 aaKnown RBP22.7■■□□□ 1.22
HDDC3-203ENST00000494993 RTN2O75298 545 aa22.7■■□□□ 1.22
HDDC3-203ENST00000494993 LDOC1O95751 146 aaPredicted RBP22.7■■□□□ 1.22
HDDC3-203ENST00000494993 GGCXP38435 758 aa22.7■■□□□ 1.22
HDDC3-203ENST00000494993 ZNF177Q13360 481 aaPredicted RBP22.7■■□□□ 1.22
HDDC3-203ENST00000494993 PTPN20Q4JDL3 420 aa22.7■■□□□ 1.22
HDDC3-203ENST00000494993 SLC26A9Q7LBE3 791 aa22.7■■□□□ 1.22
HDDC3-203ENST00000494993 PRPF39Q86UA1 669 aaKnown RBP22.7■■□□□ 1.22
HDDC3-203ENST00000494993 PDZD3Q86UT5 571 aa22.7■■□□□ 1.22
HDDC3-203ENST00000494993 TMPRSS12Q86WS5 348 aa22.7■■□□□ 1.22
HDDC3-203ENST00000494993 IRF2BP1Q8IU81 584 aa22.7■■□□□ 1.22
HDDC3-203ENST00000494993 OXR1Q8N573 874 aa22.7■■□□□ 1.22
HDDC3-203ENST00000494993 MFSD2AQ8NA29 543 aa22.7■■□□□ 1.22
HDDC3-203ENST00000494993 ERVMER34-1Q9H9K5 563 aa22.7■■□□□ 1.22
HDDC3-203ENST00000494993 ARHGAP20Q9P2F6 1191 aa22.7■■□□□ 1.22
HDDC3-203ENST00000494993 AJAP1Q9UKB5 411 aaPredicted RBP22.7■■□□□ 1.22
HDDC3-203ENST00000494993 C1QTNF3-AMACRE9PGA6 284 aa22.69■■□□□ 1.22
HDDC3-203ENST00000494993 PAGE1O75459 146 aa22.69■■□□□ 1.22
HDDC3-203ENST00000494993 CLDN11O75508 207 aa22.69■■□□□ 1.22
HDDC3-203ENST00000494993 NOS2P35228 1153 aa22.69■■□□□ 1.22
HDDC3-203ENST00000494993 NUDT1P36639 197 aa22.69■■□□□ 1.22
HDDC3-203ENST00000494993 RXRGP48443 463 aa22.69■■□□□ 1.22
HDDC3-203ENST00000494993 SNX16P57768 344 aa22.69■■□□□ 1.22
HDDC3-203ENST00000494993 SLC6A3Q01959 620 aa22.69■■□□□ 1.22
HDDC3-203ENST00000494993 DLG2Q15700 870 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms