RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 CEP112Q8N8E3 955 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 MNS1Q8NEH6 495 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 KRT12Q99456 494 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 ATP13A1Q9HD20 1204 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 DONSONQ9NYP3 566 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 SEPT10Q9P0V9 454 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 VPS28Q9UK41 221 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 ARHGAP42A6NI28 874 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 LOC730098B7Z3J9 87 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 PPP1R12AO14974 1030 aaPredicted RBP19.84■□□□□ 0.77
USP39-218ENST00000493829 NARSO43776 548 aaKnown RBP19.84■□□□□ 0.77
USP39-218ENST00000493829 GLDCP23378 1020 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 HLA-FP30511 346 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 GARSP41250 739 aaKnown RBP19.84■□□□□ 0.77
USP39-218ENST00000493829 SLC6A11P48066 632 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 BYSLQ13895 437 aaKnown RBP19.84■□□□□ 0.77
USP39-218ENST00000493829 CCNG2Q16589 344 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 GAB4Q2WGN9 574 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 ITPRIPL2Q3MIP1 535 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 PARP15Q460N3 678 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 ZNF572Q7Z3I7 529 aaPredicted RBP19.84■□□□□ 0.77
USP39-218ENST00000493829 FIBINQ8TAL6 211 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 SLC35B2Q8TB61 432 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 CSGALNACT1Q8TDX6 532 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 ARHGEF2Q92974 986 aaKnown RBP19.84■□□□□ 0.77
USP39-218ENST00000493829 QKIQ96PU8 341 aaKnown RBP eCLIP19.84■□□□□ 0.77
USP39-218ENST00000493829 TMEM121Q9BTD3 319 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 IGSF9Q9P2J2 1179 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 ZNF148Q9UQR1 794 aa19.84■□□□□ 0.77
USP39-218ENST00000493829 SHROOM3Q8TF72 1996 aa19.83■□□□□ 0.77
USP39-218ENST00000493829 ILVBLA1L0T0 632 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 CBX4O00257 560 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 CACNG3O60359 315 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 VAV1P15498 845 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 MX2P20592 715 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 NR1H3Q13133 447 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 RNF43Q68DV7 783 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 CCDC137Q6PK04 289 aaKnown RBP19.83■□□□□ 0.76
USP39-218ENST00000493829 CDKL3Q8IVW4 592 aaPredicted RBP19.83■□□□□ 0.76
USP39-218ENST00000493829 ADHFE1Q8IWW8 467 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 APCDD1Q8J025 514 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 C12orf50Q8NA57 414 aaPredicted RBP19.83■□□□□ 0.76
USP39-218ENST00000493829 TFB1MQ8WVM0 346 aaKnown RBP19.83■□□□□ 0.76
USP39-218ENST00000493829 XPO6Q96QU8 1125 aaKnown RBP19.83■□□□□ 0.76
USP39-218ENST00000493829 CEP41Q9BYV8 373 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 SP110Q9HB58 689 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 GGA2Q9UJY4 613 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 MIA3Q5JRA6 1907 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 COL4A2P08572 1712 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 KIAA1549LQ6ZVL6 1849 aa19.83■□□□□ 0.76
USP39-218ENST00000493829 NUP205Q92621 2012 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 J3KR12 359 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 RIOK3O14730 519 aaKnown RBP19.82■□□□□ 0.76
USP39-218ENST00000493829 TULP3O75386 442 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 RBL1P28749 1068 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 GJA4P35212 333 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 COILP38432 576 aaPredicted RBP19.82■□□□□ 0.76
USP39-218ENST00000493829 DGKGP49619 791 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 NRLP54845 237 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 YBEYP58557 167 aaPredicted RBP19.82■□□□□ 0.76
USP39-218ENST00000493829 ZP2Q05996 745 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 MESP2Q0VG99 397 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 CYP1B1Q16678 543 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 FUT11Q495W5 492 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 SLC45A4Q5BKX6 768 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 BZW1Q7L1Q6 419 aaKnown RBP19.82■□□□□ 0.76
USP39-218ENST00000493829 CCDC105Q8IYK2 499 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 NOA1Q8NC60 698 aaKnown RBP19.82■□□□□ 0.76
USP39-218ENST00000493829 MAGEH1Q9H213 219 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 RETREG1Q9H6L5 497 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 HOMER3Q9NSC5 361 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 KIAA1522Q9P206 1035 aaPredicted RBP19.82■□□□□ 0.76
USP39-218ENST00000493829 IPO11Q9UI26 975 aaKnown RBP19.82■□□□□ 0.76
USP39-218ENST00000493829 ACTL7AQ9Y615 435 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 RAD54BQ9Y620 910 aa19.82■□□□□ 0.76
USP39-218ENST00000493829 CCDC188H7C350 402 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 SGK1O00141 431 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 KCNK1O00180 336 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 KCNN4O15554 427 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 SNAP91O60641 907 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 OXCT1P55809 520 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 SERINC3Q13530 473 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 PRKD1Q15139 912 aaPredicted RBP19.81■□□□□ 0.76
USP39-218ENST00000493829 OASLQ15646 514 aaKnown RBP19.81■□□□□ 0.76
USP39-218ENST00000493829 GSTA5Q7RTV2 222 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 PRUNE1Q86TP1 453 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 ETFBKMTQ8IXQ9 262 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 NKD2Q969F2 451 aaPredicted RBP19.81■□□□□ 0.76
USP39-218ENST00000493829 HDAC11Q96DB2 347 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 FEM1AQ9BSK4 669 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 FRMD8P1Q9BZ68 369 aaPredicted RBP19.81■□□□□ 0.76
USP39-218ENST00000493829 AMACRQ9UHK6 382 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 NCAM2O15394 837 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 PABPC1P11940 636 aaKnown RBP19.81■□□□□ 0.76
USP39-218ENST00000493829 CHRNA3P32297 505 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 GDF10P55107 478 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 PPIDQ08752 370 aaKnown RBP19.81■□□□□ 0.76
USP39-218ENST00000493829 PITRM1Q5JRX3 1037 aa19.81■□□□□ 0.76
USP39-218ENST00000493829 HEATR6Q6AI08 1181 aaKnown RBP19.81■□□□□ 0.76
USP39-218ENST00000493829 GRAMD4Q6IC98 578 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms