RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 PPARGC1AQ9UBK2 798 aaKnown RBP10.99□□□□□ -0.65
USP4-214ENST00000491791 IGLV3-10A0A075B6K4 115 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 SYNJ2BP-COX16A0A087WUM0 186 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.98□□□□□ -0.65
USP4-214ENST00000491791 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.98□□□□□ -0.65
USP4-214ENST00000491791 WDR27A2RRH5 827 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 ENPP3O14638 875 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 ZBTB24O43167 697 aaPredicted RBP10.98□□□□□ -0.65
USP4-214ENST00000491791 HOXA2O43364 376 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 DNAJC6O75061 913 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 PAGE1O75459 146 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 UBOX5O94941 541 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 PARNO95453 639 aaKnown RBP10.98□□□□□ -0.65
USP4-214ENST00000491791 EFEMP2O95967 443 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 MGAT1P26572 445 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 EPHB2P29323 1055 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 ELAVL2Q12926 359 aaKnown RBP10.98□□□□□ -0.65
USP4-214ENST00000491791 BFSP2Q13515 415 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 GPNMBQ14956 572 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 SEPT7Q16181 437 aaKnown RBP10.98□□□□□ -0.65
USP4-214ENST00000491791 GRTP1Q5TC63 336 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 LRRC8DQ7L1W4 858 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 ANKRD33Q7Z3H0 272 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 CTAGE3PQ8IX95 158 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 TP53INP2Q8IXH6 220 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 ZNF683Q8IZ20 524 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 NUP93Q8N1F7 819 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 CCDC63Q8NA47 563 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 SCAMP5Q8TAC9 235 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 ADAM32Q8TC27 787 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 MAGEC3Q8TD91 643 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 PTCD2Q8WV60 388 aaKnown RBP10.98□□□□□ -0.65
USP4-214ENST00000491791 TBC1D31Q96DN5 1066 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 CPNE1Q99829 537 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 MLPHQ9BV36 600 aaPredicted RBP10.98□□□□□ -0.65
USP4-214ENST00000491791 IL22Q9GZX6 179 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 TTYH1Q9H313 450 aaPredicted RBP10.98□□□□□ -0.65
USP4-214ENST00000491791 SAR1AQ9NR31 198 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 OSER1Q9NX31 292 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 BFARQ9NZS9 450 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 COX16Q9P0S2 106 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 KLHL8Q9P2G9 620 aaPredicted RBP10.98□□□□□ -0.65
USP4-214ENST00000491791 SLC17A7Q9P2U7 560 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 TLR6Q9Y2C9 796 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 INPP5FQ9Y2H2 1132 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 AAR2Q9Y312 384 aaKnown RBP10.98□□□□□ -0.65
USP4-214ENST00000491791 PCDHB5Q9Y5E4 795 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 MAD1L1Q9Y6D9 718 aa10.98□□□□□ -0.65
USP4-214ENST00000491791 ZNF638Q14966 1978 aaKnown RBP10.97□□□□□ -0.65
USP4-214ENST00000491791 VCANP13611 3396 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 ZCWPW2A0A1B0GU75 182 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 KCNK1O00180 336 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 TRAFD1O14545 582 aaPredicted RBP10.97□□□□□ -0.65
USP4-214ENST00000491791 MATN3O15232 486 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 MGRN1O60291 552 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 MAFKO60675 156 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 HNRNPCL1O60812 293 aaKnown RBP10.97□□□□□ -0.65
USP4-214ENST00000491791 RTN3O95197 1032 aaPredicted RBP10.97□□□□□ -0.65
USP4-214ENST00000491791 TIMP1P01033 207 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 ZDHHC11BP0C7U3 371 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 TROVE2P10155 538 aaKnown RBP eCLIP10.97□□□□□ -0.65
USP4-214ENST00000491791 GRIK1P39086 918 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 HADHAP40939 763 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 POLD2P49005 469 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 CSRP3P50461 194 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 RABGGTBP53611 331 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 CSE1LP55060 971 aaKnown RBP10.97□□□□□ -0.65
USP4-214ENST00000491791 NCALDP61601 193 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 ZBTB17Q13105 803 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 GPR17Q13304 367 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 PPIGQ13427 754 aaKnown RBP eCLIP10.97□□□□□ -0.65
USP4-214ENST00000491791 PRPSAP1Q14558 356 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 ZKSCAN8Q15776 578 aaPredicted RBP10.97□□□□□ -0.65
USP4-214ENST00000491791 VARS2Q5ST30 1063 aaKnown RBP10.97□□□□□ -0.65
USP4-214ENST00000491791 SYCP2LQ5T4T6 812 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 FYB2Q5VWT5 728 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 NAPEPLDQ6IQ20 393 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 TIGD7Q6NT04 549 aaPredicted RBP10.97□□□□□ -0.65
USP4-214ENST00000491791 PACS1Q6VY07 963 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 ASRGL1Q7L266 308 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 PACS2Q86VP3 889 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 LCA5Q86VQ0 697 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 UMODL1-AS1Q8N2C9 162 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 CNTD1Q8N815 330 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 RTL3Q8N8U3 475 aaKnown RBP10.97□□□□□ -0.65
USP4-214ENST00000491791 SPPL2BQ8TCT7 592 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 LRRN4Q8WUT4 740 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 CASP10Q92851 521 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 MRRFQ96E11 262 aaKnown RBP10.97□□□□□ -0.65
USP4-214ENST00000491791 CERS2Q96G23 380 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 RMDN2Q96LZ7 410 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 CASD1Q96PB1 797 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 PAIP2Q9BPZ3 127 aaKnown RBP10.97□□□□□ -0.65
USP4-214ENST00000491791 SIKE1Q9BRV8 207 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 KIFC1Q9BW19 673 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 MRM3Q9HC36 420 aaKnown RBP10.97□□□□□ -0.65
USP4-214ENST00000491791 SLC40A1Q9NP59 571 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 SLCO1B3Q9NPD5 702 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 OLA1Q9NTK5 396 aaKnown RBP10.97□□□□□ -0.65
USP4-214ENST00000491791 SYBUQ9NX95 663 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms