RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 SERGEFQ9UGK8 458 aa18.62■□□□□ 0.57
COL9A3-214ENST00000490398 VPS28Q9UK41 221 aa18.62■□□□□ 0.57
COL9A3-214ENST00000490398 SLCO1B1Q9Y6L6 691 aa18.62■□□□□ 0.57
COL9A3-214ENST00000490398 CACNA1AO00555 2505 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 GON4LQ3T8J9 2241 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 A0A1W2PQJ5 194 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 K7ERQ8 282 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 NDUFS2O75306 463 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 FTLP02792 175 aaPredicted RBP18.61■□□□□ 0.57
COL9A3-214ENST00000490398 ZNF252P-AS1Q0IIN9 211 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 PLEKHA7Q6IQ23 1121 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 LRSAM1Q6UWE0 723 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 ARFGAP1Q8N6T3 406 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 NETO1Q8TDF5 533 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 ZYG11BQ9C0D3 744 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 MUC3BQ9H195 1237 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 OSBPL2Q9H1P3 480 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 TSPY26PQ9H489 355 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 C6orf106Q9H6K1 298 aaPredicted RBP18.61■□□□□ 0.57
COL9A3-214ENST00000490398 OR12D3Q9UGF7 316 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 CDV3Q9UKY7 258 aaKnown RBP18.61■□□□□ 0.57
COL9A3-214ENST00000490398 ACTL7AQ9Y615 435 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 RALGAPA1Q6GYQ0 2036 aa18.61■□□□□ 0.57
COL9A3-214ENST00000490398 EDDM13A0A1B0GTR0 161 aa18.6■□□□□ 0.57
COL9A3-214ENST00000490398 TARSL2A2RTX5 802 aaKnown RBP18.6■□□□□ 0.57
COL9A3-214ENST00000490398 SLC30A4O14863 429 aa18.6■□□□□ 0.57
COL9A3-214ENST00000490398 MID1O15344 667 aa18.6■□□□□ 0.57
COL9A3-214ENST00000490398 LRIG2O94898 1065 aa18.6■□□□□ 0.57
COL9A3-214ENST00000490398 PUM1Q14671 1186 aaKnown RBP eCLIP18.6■□□□□ 0.57
COL9A3-214ENST00000490398 TRIM61Q5EBN2 209 aa18.6■□□□□ 0.57
COL9A3-214ENST00000490398 STPG1Q5TH74 334 aa18.6■□□□□ 0.57
COL9A3-214ENST00000490398 ZNF776Q68DI1 518 aaPredicted RBP18.6■□□□□ 0.57
COL9A3-214ENST00000490398 SCYL2Q6P3W7 929 aa18.6■□□□□ 0.57
COL9A3-214ENST00000490398 LINGO4Q6UY18 593 aa18.6■□□□□ 0.57
COL9A3-214ENST00000490398 MMAAQ8IVH4 418 aaKnown RBP18.6■□□□□ 0.57
COL9A3-214ENST00000490398 DRC7Q8IY82 874 aa18.6■□□□□ 0.57
COL9A3-214ENST00000490398 CNPY3Q9BT09 278 aa18.6■□□□□ 0.57
COL9A3-214ENST00000490398 EDEM2Q9BV94 578 aa18.6■□□□□ 0.57
COL9A3-214ENST00000490398 NUP58Q9BVL2 599 aa18.6■□□□□ 0.57
COL9A3-214ENST00000490398 PABPC3Q9H361 631 aaKnown RBP18.6■□□□□ 0.57
COL9A3-214ENST00000490398 VPS51Q9UID3 782 aa18.6■□□□□ 0.57
COL9A3-214ENST00000490398 CAPN11Q9UMQ6 739 aa18.6■□□□□ 0.57
COL9A3-214ENST00000490398 NUP205Q92621 2012 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 RNF103O00237 685 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 KHNYNO15037 678 aaKnown RBP18.59■□□□□ 0.57
COL9A3-214ENST00000490398 SMAD6O43541 496 aaKnown RBP18.59■□□□□ 0.57
COL9A3-214ENST00000490398 ATP9BO43861 1147 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 DNTTP04053 509 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 SRCP12931 536 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 OR1E1P30953 314 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 ACVRL1P37023 503 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 PSMD8P48556 350 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 OXCT1P55809 520 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 NRG1Q02297 640 aaPredicted RBP18.59■□□□□ 0.57
COL9A3-214ENST00000490398 SULT2A1Q06520 285 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 DLG2Q15700 870 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 CST6Q15828 149 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 DCAF12L1Q5VU92 463 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 DCUN1D2Q6PH85 259 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 Q6ZVU0 165 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 NLRP14Q86W24 1093 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 SH2D3CQ8N5H7 860 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 NTAN1Q96AB6 310 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 VCPIP1Q96JH7 1222 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 GPATCH2LQ9NWQ4 482 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 PPARGC1AQ9UBK2 798 aaKnown RBP18.59■□□□□ 0.57
COL9A3-214ENST00000490398 CNOT8Q9UFF9 292 aaKnown RBP18.59■□□□□ 0.57
COL9A3-214ENST00000490398 SARDHQ9UL12 918 aa18.59■□□□□ 0.57
COL9A3-214ENST00000490398 NUMA1Q14980 2115 aa18.58■□□□□ 0.57
COL9A3-214ENST00000490398 A0A1W2PP55 124 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 TMEM191CA6NGB0 347 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 PLK4O00444 970 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 CDX4O14627 284 aaPredicted RBP18.58■□□□□ 0.56
COL9A3-214ENST00000490398 RTN2O75298 545 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 ZMPSTE24O75844 475 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 GZMAP12544 262 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 OXTRP30559 389 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 CASP14P31944 242 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 ZBED6P86452 979 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 ZBTB16Q05516 673 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 ARL13BQ3SXY8 428 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 ACCSLQ4AC99 568 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 RWDD4Q6NW29 188 aaKnown RBP18.58■□□□□ 0.56
COL9A3-214ENST00000490398 TMC6Q7Z403 805 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 SLFN11Q7Z7L1 901 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 SETD3Q86TU7 594 aaPredicted RBP18.58■□□□□ 0.56
COL9A3-214ENST00000490398 RGL4Q8IZJ4 473 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 AADATQ8N5Z0 425 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 OR2I1PQ8NGU4 316 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 PEBP4Q96S96 227 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 SPON2Q9BUD6 331 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 ISCUQ9H1K1 167 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 FBRSQ9HAH7 460 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 PARVAQ9NVD7 372 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 TMEM51Q9NW97 253 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 ADAMTS1Q9UHI8 967 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 EVLQ9UI08 416 aaPredicted RBP18.58■□□□□ 0.56
COL9A3-214ENST00000490398 DNAI1Q9UI46 699 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 SLC25A13Q9UJS0 675 aa18.58■□□□□ 0.56
COL9A3-214ENST00000490398 FZD10Q9ULW2 581 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms