RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 SPATA1Q5VX52 437 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 WDR93Q6P2C0 686 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 SLC22A25Q6T423 547 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 C16orf54Q6UWD8 224 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 KCNG4Q8TDN1 519 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 TRMT61AQ96FX7 289 aaKnown RBP4.41□□□□□ -1.7
PTCD3-216ENST00000487043 ELOVL1Q9BW60 279 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 PHF7Q9BWX1 381 aaPredicted RBP4.41□□□□□ -1.7
PTCD3-216ENST00000487043 PDCL3Q9H2J4 239 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 PNNQ9H307 717 aaKnown RBP4.41□□□□□ -1.7
PTCD3-216ENST00000487043 USP29Q9HBJ7 922 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 RXFP3Q9NSD7 469 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 KLC4Q9NSK0 619 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 PARPBPQ9NWS1 579 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 AURKAIP1Q9NWT8 199 aaPredicted RBP4.41□□□□□ -1.7
PTCD3-216ENST00000487043 CLIC5Q9NZA1 410 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 EHD3Q9NZN3 535 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 ANKFY1Q9P2R3 1169 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 DKK2Q9UBU2 259 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 CNOT7Q9UIV1 285 aaKnown RBP4.41□□□□□ -1.7
PTCD3-216ENST00000487043 SUFUQ9UMX1 484 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 COL3A1P02461 1466 aaPredicted RBP4.41□□□□□ -1.7
PTCD3-216ENST00000487043 MAP3K19Q56UN5 1328 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 ZBED9Q6R2W3 1325 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 TRPM3Q9HCF6 1732 aaPredicted RBP4.41□□□□□ -1.7
PTCD3-216ENST00000487043 PI4KAP2A4QPH2 592 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 TMEM200CA6NKL6 621 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 GRM8O00222 908 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 ZNF213O14771 459 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 DHX16O60231 1041 aaKnown RBP4.4□□□□□ -1.71
PTCD3-216ENST00000487043 TIPRLO75663 272 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 NXPH3O95157 252 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 DLDP09622 509 aaKnown RBP4.4□□□□□ -1.71
PTCD3-216ENST00000487043 TMIGD3P0DMS9 266 aaPredicted RBP4.4□□□□□ -1.71
PTCD3-216ENST00000487043 NR2F6P10588 404 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 LYL1P12980 280 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 ZFXP17010 805 aaPredicted RBP4.4□□□□□ -1.71
PTCD3-216ENST00000487043 CTGFP29279 349 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 AMPHP49418 695 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 CLNS1AP54105 237 aaKnown RBP4.4□□□□□ -1.71
PTCD3-216ENST00000487043 FOXL2P58012 376 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 TXNL4AP83876 142 aaKnown RBP4.4□□□□□ -1.71
PTCD3-216ENST00000487043 SLC25A3Q00325 362 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 TLE3Q04726 772 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 KRTAP1-1Q07627 177 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 CCDC15Q0P6D6 951 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 BMPR2Q13873 1038 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 ERV3-1Q14264 604 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 R3HDM1Q15032 1099 aaKnown RBP4.4□□□□□ -1.71
PTCD3-216ENST00000487043 DENND1BQ6P3S1 775 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 PTCHD4Q6ZW05 846 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 H1FNTQ75WM6 255 aaPredicted RBP4.4□□□□□ -1.71
PTCD3-216ENST00000487043 B4GALNT4Q76KP1 1039 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 ARHGEF25Q86VW2 580 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 C1orf210Q8IVY1 113 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 LNX2Q8N448 690 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 NGEFQ8N5V2 710 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 IL17DQ8TAD2 202 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 ADAMTS15Q8TE58 950 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 SLC25A43Q8WUT9 341 aaPredicted RBP4.4□□□□□ -1.71
PTCD3-216ENST00000487043 ASB10Q8WXI3 467 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 IP6K1Q92551 441 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 KCNJ9Q92806 393 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 EXTL1Q92935 676 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 FUBP1Q96AE4 644 aaKnown RBP4.4□□□□□ -1.71
PTCD3-216ENST00000487043 LRRC59Q96AG4 307 aaKnown RBP4.4□□□□□ -1.71
PTCD3-216ENST00000487043 MYEOVQ96EZ4 313 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 FUZQ9BT04 418 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 ALG8Q9BVK2 526 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 CINPQ9BW66 212 aaPredicted RBP4.4□□□□□ -1.71
PTCD3-216ENST00000487043 TAOK3Q9H2K8 898 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 PRDM13Q9H4Q3 707 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 MROH8Q9H579 483 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 CEP72Q9P209 647 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 POLG2Q9UHN1 485 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 AMFRQ9UKV5 643 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 NAALADL1Q9UQQ1 740 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 SH2B3Q9UQQ2 575 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 TESMINQ9Y4I5 508 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 PXDNQ92626 1479 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 CDK12Q9NYV4 1490 aaPredicted RBP4.4□□□□□ -1.71
PTCD3-216ENST00000487043 SHPRHQ149N8 1683 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 ALS2Q96Q42 1657 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 MARF1Q9Y4F3 1742 aaKnown RBP4.4□□□□□ -1.71
PTCD3-216ENST00000487043 ARHGEF10O15013 1369 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 FLT4P35916 1363 aa4.4□□□□□ -1.71
PTCD3-216ENST00000487043 TNS3Q68CZ2 1445 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 IQSEC2Q5JU85 1478 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 CENPVL1A0A0U1RR11 272 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 TCERG1O14776 1098 aaKnown RBP4.39□□□□□ -1.71
PTCD3-216ENST00000487043 TNPO2O14787 897 aaKnown RBP4.39□□□□□ -1.71
PTCD3-216ENST00000487043 TSPAN4O14817 238 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 PROM1O43490 865 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 PEX1O43933 1283 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 TMPRSS11DO60235 418 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 ZNF500O60304 480 aaPredicted RBP4.39□□□□□ -1.71
PTCD3-216ENST00000487043 PRAMEF2O60811 474 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 GUCY1B2O75343 617 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 TULP3O75386 442 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 TMEM63AO94886 807 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms