RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	PRAMEF17	Q5VTA0	474 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	ARHGEF16	Q5VV41	709 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	MORN5	Q5VZ52	161 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	CHST3	Q7LGC8	479 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	USP37	Q86T82	979 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	ZNF589	Q86UQ0	364 aa	Predicted RBP	4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	TBC1D10C	Q8IV04	446 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	ADGRF4	Q8IZF3	695 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	PPTC7	Q8NI37	304 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	TGS1	Q96RS0	853 aa	Known RBP	4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	TINAGL1	Q9GZM7	467 aa	Predicted RBP	4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	UBA5	Q9GZZ9	404 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	CPVL	Q9H3G5	476 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	KAT14	Q9H8E8	782 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	JMJD4	Q9H9V9	463 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	RLIM	Q9NVW2	624 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	MAP3K20	Q9NYL2	800 aa	Known RBP	4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	COL20A1	Q9P218	1284 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	HDAC6	Q9UBN7	1215 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	SSX2IP	Q9Y2D8	614 aa		4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	CFAP20	Q9Y6A4	193 aa	Known RBP	4.54	□□□□□ -1.68
SNRNP40-205	ENST00000486941	NEDD4	P46934	1319 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	EMSY	Q7Z589	1322 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	TRIM38	O00635	465 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	JTB	O76095	146 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	AHSG	P02765	367 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	IL6R	P08887	468 aa	Predicted RBP	4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	PARP1	P09874	1014 aa	Known RBP	4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	CD6	P30203	668 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	CDKN1C	P49918	316 aa	Predicted RBP	4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	HSD17B4	P51659	736 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	CLCN2	P51788	898 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	TUBA4A	P68366	448 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	CYP4F2	P78329	520 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	HTRA4	P83105	476 aa	Predicted RBP	4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	TRAF1	Q13077	416 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	TCTN1	Q2MV58	587 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	TRIM71	Q2Q1W2	868 aa	Known RBP	4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	LEXM	Q3ZCV2	418 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	CELF3	Q5SZQ8	465 aa	Known RBP	4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	ZNF618	Q5T7W0	954 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	STOX1	Q6ZVD7	989 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	TMCO2	Q7Z6W1	182 aa	Predicted RBP	4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	TTC7B	Q86TV6	843 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	DTX2	Q86UW9	622 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	SERINC5	Q86VE9	423 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	CHSY1	Q86X52	802 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	PPP1R3B	Q86XI6	285 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	AOPEP	Q8N6M6	819 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	ENAH	Q8N8S7	591 aa	Predicted RBP	4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	GDPD5	Q8WTR4	605 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	RILPL2	Q969X0	211 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	MTMR8	Q96EF0	704 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	ZC3H10	Q96K80	434 aa	Known RBP	4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	C16orf70	Q9BSU1	422 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	CNPPD1	Q9BV87	410 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	KRT23	Q9C075	422 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	SEMA4C	Q9C0C4	833 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	MRPL46	Q9H2W6	279 aa	Known RBP	4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	UBE2Z	Q9H832	354 aa	Predicted RBP	4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	VAT1L	Q9HCJ6	419 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	PXMP2	Q9NR77	195 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	CTNNA3	Q9UI47	895 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	ATP8A1	Q9Y2Q0	1164 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	RAD54B	Q9Y620	910 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	RALGAPA2	Q2PPJ7	1873 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	DOCK5	Q9H7D0	1870 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	TTC3	P53804	2025 aa		4.53	□□□□□ -1.68
SNRNP40-205	ENST00000486941	ZNF318	Q5VUA4	2279 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	SMIM35	A0A1B0GVV1	85 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	RSPH10B2	B2RC85	870 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	HIP1	O00291	1037 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	ZBTB5	O15062	677 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	DHX16	O60231	1041 aa	Known RBP	4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	CAND2	O75155	1236 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	KATNA1	O75449	491 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	GGPS1	O95749	300 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	RSPH10B	P0C881	870 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	ZNF286B	P0CG31	522 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	MYCL	P12524	364 aa	Predicted RBP	4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	HOXC8	P31273	242 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	PTGER1	P34995	402 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	THPO	P40225	353 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	PIK3CG	P48736	1102 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	RRP1	P56182	461 aa	Known RBP	4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	KRT85	P78386	507 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	PGM5	Q15124	567 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	PTPRO	Q16827	1216 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	IMMT	Q16891	758 aa	Known RBP	4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	UAP1L1	Q3KQV9	507 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	HSDL1	Q3SXM5	330 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	PLAC9	Q5JTB6	97 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	AWAT2	Q6E213	333 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	PPP4R3A	Q6IN85	833 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	KRTAP5-11	Q6L8G4	156 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	TMEM108	Q6UXF1	575 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	4.52	□□□□□ -1.69	3e-7	■■■■■ 29.2
SNRNP40-205	ENST00000486941	SMC5	Q8IY18	1101 aa		4.52	□□□□□ -1.69
SNRNP40-205	ENST00000486941	DBF4B	Q8NFT6	615 aa		4.52	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms