RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 PDK4Q16654 411 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 LAYNQ6UX15 382 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 HS6ST3Q8IZP7 471 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 CSGALNACT1Q8TDX6 532 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 ZNF483Q8TF39 744 aaPredicted RBP11.23□□□□□ -0.61
HDAC6-228ENST00000486227 NDRG1Q92597 394 aaKnown RBP11.23□□□□□ -0.61
HDAC6-228ENST00000486227 PCDH18Q9HCL0 1135 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 CASS4Q9NQ75 786 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 DPPA5A6NC42 116 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 UNCXA6NJT0 531 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 XPO1O14980 1071 aaKnown RBP11.23□□□□□ -0.61
HDAC6-228ENST00000486227 SPTLC1O15269 473 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 CHADO15335 359 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 E2F6O75461 281 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 GNRH1P01148 92 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 ALADP13716 330 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 HDAC4P56524 1084 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 ARHGAP1Q07960 439 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 KCNA10Q16322 511 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 ARMC6Q6NXE6 501 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 PMF1Q6P1K2 205 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 IFNL1Q8IU54 200 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 OR52K1Q8NGK4 314 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 ZFRQ96KR1 1074 aaKnown RBP11.23□□□□□ -0.61
HDAC6-228ENST00000486227 PADI3Q9ULW8 664 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 A8MUI8 341 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 INHAP05111 366 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 ACADMP11310 421 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 SELPP16109 830 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 TCN1P20061 433 aaPredicted RBP11.23□□□□□ -0.61
HDAC6-228ENST00000486227 NPY2RP49146 381 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 ITGA9Q13797 1035 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 SGO1Q5FBB7 561 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 ANKS3Q6ZW76 656 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 MARK2Q7KZI7 788 aaKnown RBP11.23□□□□□ -0.61
HDAC6-228ENST00000486227 CPNE8Q86YQ8 564 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 LRRC39Q96DD0 335 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 VAT1Q99536 393 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 CCDC28BQ9BUN5 200 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 NMRK1Q9NWW6 199 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 SOX13Q9UN79 622 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 VPS9D1Q9Y2B5 631 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 SNX5Q9Y5X3 404 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 SMIM31A0A1B0GVY4 71 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 KRT36O76013 467 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 CYP1A1P04798 512 aaPredicted RBP11.22□□□□□ -0.61
HDAC6-228ENST00000486227 ERVK-10P10266 1014 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 CRHR2Q13324 411 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 APOPT1Q96IL0 206 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 SLC27A5Q9Y2P5 690 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 PTCH2Q9Y6C5 1203 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 CRYBG1Q9Y4K1 1723 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 SCAMP3O14828 347 aaKnown RBP11.22□□□□□ -0.61
HDAC6-228ENST00000486227 GLP2RO95838 553 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 ATP5BP06576 529 aaKnown RBP11.22□□□□□ -0.61
HDAC6-228ENST00000486227 TPP2P29144 1249 aaPredicted RBP11.22□□□□□ -0.61
HDAC6-228ENST00000486227 SOX11P35716 441 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 TUSC3Q13454 348 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 USP41Q3LFD5 358 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 ZNF470Q6ECI4 717 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 TTC27Q6P3X3 843 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 SLC39A4Q6P5W5 647 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 PLEKHO2Q8TD55 490 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 MINDY3Q9H8M7 445 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 PCDHGC3Q9UN70 934 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 A0A096LPK6 155 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 NT5C1B-RDH14C9J2C7 533 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 SMNDC1O75940 238 aaKnown RBP eCLIP11.22□□□□□ -0.611e-6■■□□□ 12.9
HDAC6-228ENST00000486227 CRTAMO95727 393 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 ABHD2P08910 425 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 IL10P22301 178 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 CD151P48509 253 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 PRKCZQ05513 592 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 FITM2Q8N6M3 262 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 DDHD1Q8NEL9 900 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 SIKE1Q9BRV8 207 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 CNGB3Q9NQW8 809 aa11.22□□□□□ -0.61
HDAC6-228ENST00000486227 NCF1BA6NI72 391 aaPredicted RBP11.21□□□□□ -0.61
HDAC6-228ENST00000486227 NCF1CA8MVU1 366 aaPredicted RBP11.21□□□□□ -0.61
HDAC6-228ENST00000486227 VPS26AO75436 327 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 SOAT2O75908 522 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 NCF1P14598 390 aaPredicted RBP11.21□□□□□ -0.61
HDAC6-228ENST00000486227 DDX5P17844 614 aaKnown RBP11.21□□□□□ -0.61
HDAC6-228ENST00000486227 GRK2P25098 689 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 ZNF135P52742 658 aaPredicted RBP11.21□□□□□ -0.61
HDAC6-228ENST00000486227 POU4F1Q01851 419 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 GRIK3Q13003 919 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 DDR2Q16832 855 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 DCLRE1AQ6PJP8 1040 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 PSTKQ8IV42 348 aaKnown RBP11.21□□□□□ -0.61
HDAC6-228ENST00000486227 NUP93Q8N1F7 819 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 LPCAT1Q8NF37 534 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 FBXL18Q96ME1 805 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 MFSD1Q9H3U5 465 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 CAAP1Q9H8G2 361 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 MRGBPQ9NV56 204 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 PKD2L2Q9NZM6 624 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 AURKCQ9UQB9 309 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 TTC36A6NLP5 189 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 TRDMT1O14717 391 aaKnown RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms