RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TADA2AO75478 443 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 MOCS2O96007 188 aaPredicted RBP13.52□□□□□ -0.24
COL6A3-209ENST00000472056 LYPLAL1Q5VWZ2 237 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 R3HCC1LQ7Z5L2 792 aaKnown RBP13.52□□□□□ -0.24
COL6A3-209ENST00000472056 ATL1Q8WXF7 558 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 RTKNQ9BST9 563 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 CDC16Q13042 620 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 LRRC38Q5VT99 294 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 RASSF6Q6ZTQ3 369 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 RAB43Q86YS6 212 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 WDR49Q8IV35 697 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 CDRT15Q96T59 188 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 CAPN6Q9Y6Q1 641 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.52□□□□□ -0.25
COL6A3-209ENST00000472056 F5H5T6 163 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 QSOX1O00391 747 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 ZNF177Q13360 481 aaPredicted RBP13.52□□□□□ -0.25
COL6A3-209ENST00000472056 RRP1BQ14684 758 aaKnown RBP13.52□□□□□ -0.25
COL6A3-209ENST00000472056 PCBP1Q15365 356 aaKnown RBP eCLIP13.52□□□□□ -0.25
COL6A3-209ENST00000472056 MEA1Q16626 185 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 FAM98CQ17RN3 349 aaKnown RBP13.52□□□□□ -0.25
COL6A3-209ENST00000472056 ATP13A5Q4VNC0 1218 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 CHSY1Q86X52 802 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 PHC3Q8NDX5 983 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 SUN5Q8TC36 379 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 NEDD4LQ96PU5 975 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 MTG1Q9BT17 334 aaPredicted RBP13.52□□□□□ -0.25
COL6A3-209ENST00000472056 FBXO44Q9H4M3 255 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 NOS1APO75052 506 aaPredicted RBP13.52□□□□□ -0.25
COL6A3-209ENST00000472056 OR6B1O95007 311 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 SLC5A9Q2M3M2 681 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 UXS1Q8NBZ7 420 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 TRPV3Q8NET8 790 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 TBC1D10AQ9BXI6 508 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 NUP214P35658 2090 aaPredicted RBP13.52□□□□□ -0.25
COL6A3-209ENST00000472056 ECE2O60344 883 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 MYL3P08590 195 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 CIAPIN1Q6FI81 312 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 USP21Q9UK80 565 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 SPAG17Q6Q759 2223 aa13.52□□□□□ -0.25
COL6A3-209ENST00000472056 ANPEPP15144 967 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 POLR2LP62875 67 aaKnown RBP13.51□□□□□ -0.25
COL6A3-209ENST00000472056 TXNDC11Q6PKC3 985 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 WDR48Q8TAF3 677 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 SENP6Q9GZR1 1112 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-209ENST00000472056 KLHL1Q9NR64 748 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 UPB1Q9UBR1 384 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 HEATR1Q9H583 2144 aaKnown RBP13.51□□□□□ -0.25
COL6A3-209ENST00000472056 SPIDRQ14159 915 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 CWF19L1Q69YN2 538 aaKnown RBP13.51□□□□□ -0.25
COL6A3-209ENST00000472056 GPRASP2Q96D09 838 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 ERMAPQ96PL5 475 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-209ENST00000472056 NUDT12Q9BQG2 462 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 NYAP2Q9P242 653 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 MORF4L1Q9UBU8 362 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 MGAT4AQ9UM21 535 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 PIN4Q9Y237 131 aaKnown RBP13.51□□□□□ -0.25
COL6A3-209ENST00000472056 CPS1P31327 1500 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 APOC1P02654 83 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 CHRNGP07510 517 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 ZNF7P17097 686 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-209ENST00000472056 LBPP18428 481 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 MCOLN3Q8TDD5 553 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 TCF12Q99081 682 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 NOL11Q9H8H0 719 aaKnown RBP13.51□□□□□ -0.25
COL6A3-209ENST00000472056 COL15A1P39059 1388 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 DCXO43602 365 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 THRBP10828 461 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 GSSP48637 474 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 TMEM132BQ14DG7 1078 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 PTPRNQ16849 979 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 SPPL2AQ8TCT8 520 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 RAB2BQ8WUD1 216 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 MKLN1Q9UL63 735 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 KIF1AQ12756 1690 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 DHRS12A0PJE2 317 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 ASMTLO95671 621 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 NR2F6P10588 404 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 CXCR2P25025 360 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 ERFP50548 548 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 CLCN2P51788 898 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 CYP24A1Q07973 514 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 ARHGAP15Q53QZ3 475 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 HERC6Q8IVU3 1022 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 MAGEL2Q9UJ55 1249 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 SETD1AO15047 1707 aaKnown RBP13.51□□□□□ -0.25
COL6A3-209ENST00000472056 SLC25A27O95847 323 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 ACOT2P49753 483 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 GLB1LQ6UWU2 654 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 TCAIMQ8N3R3 496 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 SERAC1Q96JX3 654 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 GIN1Q9NXP7 522 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 DNPEPQ9ULA0 475 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 PCDHGA10Q9Y5H3 936 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 OGTO15294 1046 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 KPNA6O60684 536 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 PMPCBO75439 489 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 PAEPP09466 180 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 PDCD4Q53EL6 469 aaKnown RBP13.51□□□□□ -0.25
COL6A3-209ENST00000472056 LDHDQ86WU2 507 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms