RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	VPS52	Q8N1B4	723 aa		4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044	PCYOX1L	Q8NBM8	494 aa		4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044	ZCCHC10	Q8TBK6	192 aa		4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044	IGFBPL1	Q8WX77	278 aa		4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044	ST8SIA4	Q92187	359 aa		4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044	ZG16B	Q96DA0	208 aa		4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044	CD180	Q99467	661 aa		4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044	FAM118B	Q9BPY3	351 aa		4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044	CADM1	Q9BY67	442 aa	Known RBP	4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044	CTDSP1	Q9GZU7	261 aa		4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044		Q9N2J8	555 aa		4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044	ARL15	Q9NXU5	204 aa		4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044	CNOT7	Q9UIV1	285 aa	Known RBP	4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044	HSF4	Q9ULV5	492 aa		4.19	□□□□□ -1.74
PTCD3-209	ENST00000472044	CYP2D7	A0A087X1C5	515 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	GAGE10	A6NGK3	116 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	C2CD4B	A6NLJ0	364 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	SYN3	O14994	580 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	LCK	P06239	509 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	PRKCH	P24723	683 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	TYK2	P29597	1187 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	MTNR1A	P48039	350 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	INHBE	P58166	350 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	ZNF268	Q14587	947 aa	Predicted RBP	4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	DAZAP2	Q15038	168 aa	Predicted RBP	4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	PRICKLE4	Q2TBC4	344 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	CEP78	Q5JTW2	689 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	SH2D4B	Q5SQS7	431 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	SLC9C2	Q5TAH2	1124 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	KIAA1614	Q5VZ46	1190 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	DEF8	Q6ZN54	512 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	RNF144B	Q7Z419	303 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	RFWD2	Q8NHY2	731 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	WIPF2	Q8TF74	440 aa	Predicted RBP	4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	CLMN	Q96JQ2	1002 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	FRG2B	Q96QU4	278 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	CLSTN3	Q9BQT9	956 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	PIMREG	Q9BSJ6	248 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	NPL	Q9BXD5	320 aa	Predicted RBP	4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	SLC26A6	Q9BXS9	759 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	PAIP1	Q9H074	479 aa	Known RBP	4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	MOV10	Q9HCE1	1003 aa	Known RBP	4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	PREB	Q9HCU5	417 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	IPO11	Q9UI26	975 aa	Known RBP	4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	CYP46A1	Q9Y6A2	500 aa		4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	4.18	□□□□□ -1.74
PTCD3-209	ENST00000472044	BCAR3	O75815	825 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	WNT1	P04628	370 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	ATP5F1	P24539	256 aa	Predicted RBP	4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	RPS13	P62277	151 aa	Known RBP	4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	STIM1	Q13586	685 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	CAMK1	Q14012	370 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	GPR68	Q15743	365 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	SMN1	Q16637	294 aa	Known RBP	4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	SLC9C1	Q4G0N8	1177 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	PAPD7	Q5XG87	772 aa	Known RBP	4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	MIS18BP1	Q6P0N0	1132 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	FAM57B	Q71RH2	274 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	NEK8	Q86SG6	692 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	ZNF366	Q8N895	744 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	SETD9	Q8NE22	299 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	RFFL	Q8WZ73	363 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	IP6K1	Q92551	441 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	ZBTB10	Q96DT7	871 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	RNF125	Q96EQ8	232 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	RRP36	Q96EU6	259 aa	Known RBP	4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	APOPT1	Q96IL0	206 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	FRMD8	Q9BZ67	464 aa	Predicted RBP	4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	ACAD9	Q9H845	621 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	TTC12	Q9H892	705 aa	Predicted RBP	4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	PDGFC	Q9NRA1	345 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	BEX4	Q9NWD9	120 aa	Predicted RBP	4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	PPP1R14D	Q9NXH3	145 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	ALKBH4	Q9NXW9	302 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	HCN3	Q9P1Z3	774 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	HDAC6	Q9UBN7	1215 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	UPB1	Q9UBR1	384 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	SLC25A10	Q9UBX3	287 aa	Predicted RBP	4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	OSGIN2	Q9Y236	505 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	CLDN16	Q9Y5I7	305 aa		4.17	□□□□□ -1.74
PTCD3-209	ENST00000472044	MST1R	Q04912	1400 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	TCRBV7S3A2	A0A539	114 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044		B4E171	279 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	TEX22	C9J3V5	150 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	TP73	O15350	636 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	CHRM4	P08173	479 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	CTSA	P10619	480 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	FCGR2A	P12318	317 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	CHRNA5	P30532	468 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	KRT9	P35527	623 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	TSPAN7	P41732	249 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	GHRHR	Q02643	423 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	IL13RA2	Q14627	380 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	PGM5	Q15124	567 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	RALBP1	Q15311	655 aa		4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	MAPRE1	Q15691	268 aa	Known RBP	4.16	□□□□□ -1.74
PTCD3-209	ENST00000472044	NFIL3	Q16649	462 aa		4.16	□□□□□ -1.74

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