RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 DNAJC3Q13217 504 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 SLC14A1Q13336 389 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 NNTQ13423 1086 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 DLG2Q15700 870 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 RNF219Q5W0B1 726 aaPredicted RBP8.32□□□□□ -1.08
USP48-207ENST00000471752 KIAA0895LQ68EN5 471 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 LINGO4Q6UY18 593 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 C11orf57Q6ZUT1 292 aaPredicted RBP8.32□□□□□ -1.08
USP48-207ENST00000471752 SPATS2Q86XZ4 545 aaKnown RBP8.32□□□□□ -1.08
USP48-207ENST00000471752 XYLT1Q86Y38 959 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 EMC1Q8N766 993 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 CHST14Q8NCH0 376 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 OR14C36Q8NHC7 312 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 MDM1Q8TC05 714 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 GPT2Q8TD30 523 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 CPA5Q8WXQ8 436 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 RNF34Q969K3 372 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 BTN2A3PQ96KV6 586 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 PCDHB18PQ96TA0 734 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 NPY6RQ99463 290 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 TUBGCP2Q9BSJ2 902 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 LMBRD1Q9NUN5 540 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.32□□□□□ -1.08
USP48-207ENST00000471752 TAB2Q9NYJ8 693 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 SUSD2Q9UGT4 822 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 NFE2L3Q9Y4A8 694 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 NEUROG3Q9Y4Z2 214 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 CEP83Q9Y592 693 aa8.32□□□□□ -1.08
USP48-207ENST00000471752 KNTC1P50748 2209 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 ITIH6Q6UXX5 1313 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 DOCK9Q9BZ29 2069 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 PLXNB3Q9ULL4 1909 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 EDDM13A0A1B0GTR0 161 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 A0A1W2PPC4 97 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 TARSL2A2RTX5 802 aaKnown RBP8.31□□□□□ -1.08
USP48-207ENST00000471752 F5H5T6 163 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 FAM72CH0Y354 149 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 GOLGA8SH3BPF8 625 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 CASC3O15234 703 aaKnown RBP8.31□□□□□ -1.08
USP48-207ENST00000471752 MED7O43513 233 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 DKK1O94907 266 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 IL1BP01584 269 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 APOEP02649 317 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 SRPRAP08240 638 aaKnown RBP8.31□□□□□ -1.08
USP48-207ENST00000471752 MMEP08473 750 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 MYF5P13349 255 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 PRKCSHP14314 528 aaPredicted RBP8.31□□□□□ -1.08
USP48-207ENST00000471752 CYP11B1P15538 503 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 RRM1P23921 792 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 DPP6P42658 865 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 CXCR3P49682 368 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 AFF3P51826 1226 aaKnown RBP8.31□□□□□ -1.08
USP48-207ENST00000471752 PLK1P53350 603 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 ZNF445P59923 1031 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 ST8SIA6P61647 398 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 RAPGEF1Q13905 1077 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 ARID5BQ14865 1188 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 MAN2A1Q16706 1144 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 ZNF423Q2M1K9 1284 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 EFHC1Q5JVL4 640 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 FAM72AQ5TYM5 149 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 FAM72DQ6L9T8 149 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 CCNI2Q6ZMN8 369 aaPredicted RBP8.31□□□□□ -1.08
USP48-207ENST00000471752 LEKR1Q6ZMV7 388 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 Q6ZVU0 165 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 ENOSF1Q7L5Y1 443 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 SLC26A9Q7LBE3 791 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 RABEPKQ7Z6M1 372 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 TFAP2DQ7Z6R9 452 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 FAM72BQ86X60 149 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 DNAAF5Q86Y56 855 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 ATP6V0D2Q8N8Y2 350 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 MLKLQ8NB16 471 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 OR7D4Q8NG98 312 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 SLC30A5Q8TAD4 765 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 ADAMTS14Q8WXS8 1223 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 ZCCHC14Q8WYQ9 949 aaKnown RBP8.31□□□□□ -1.08
USP48-207ENST00000471752 NT5C3BQ969T7 300 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 ARRDC3Q96B67 414 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 CRELD1Q96HD1 420 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 RPRD1AQ96P16 312 aaPredicted RBP8.31□□□□□ -1.08
USP48-207ENST00000471752 OMDQ99983 421 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 TKTL2Q9H0I9 626 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 VPS16Q9H269 839 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 TNKS2Q9H2K2 1166 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 SGK2Q9HBY8 427 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 NDFIP2Q9NV92 336 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 CHMP5Q9NZZ3 219 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 ZNF212Q9UDV6 495 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 ADAMTS1Q9UHI8 967 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 PPM1HQ9ULR3 514 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 PCDHB9Q9Y5E1 797 aa8.31□□□□□ -1.08
USP48-207ENST00000471752 URB1O60287 2271 aaKnown RBP8.31□□□□□ -1.08
USP48-207ENST00000471752 ARID1BQ8NFD5 2236 aaPredicted RBP8.3□□□□□ -1.08
USP48-207ENST00000471752 TBC1D3DA0A087WVF3 549 aa8.3□□□□□ -1.08
USP48-207ENST00000471752 TBC1D3IA0A087WXS9 549 aa8.3□□□□□ -1.08
USP48-207ENST00000471752 TBC1D3EA0A087X179 549 aa8.3□□□□□ -1.08
USP48-207ENST00000471752 TBC1D3KA0A087X1G2 549 aa8.3□□□□□ -1.08
USP48-207ENST00000471752 GTPBP10A4D1E9 387 aaKnown RBP8.3□□□□□ -1.08
USP48-207ENST00000471752 TBC1D3FA6NER0 549 aaPredicted RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms