RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 TTC1Q99614 292 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 AGPAT1Q99943 283 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 DESI2Q9BSY9 194 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 MED10Q9BTT4 135 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 C11orf84Q9BUA3 381 aaPredicted RBP4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 MRPL9Q9BYD2 267 aaKnown RBP4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 GPR88Q9GZN0 384 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 ELOVL4Q9GZR5 314 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 MTIF3Q9H2K0 278 aaKnown RBP4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 DPEP3Q9H4B8 488 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 CWH43Q9H720 699 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 IFT22Q9H7X7 185 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 CYP3A43Q9HB55 503 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 DLL4Q9NR61 685 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 FAM49BQ9NUQ9 324 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 SPTLC3Q9NUV7 552 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 TRMT1Q9NXH9 659 aaKnown RBP4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 DDX43Q9NXZ2 648 aaKnown RBP4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 AIPL1Q9NZN9 384 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 ARHGAP20Q9P2F6 1191 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 FBXL5Q9UKA1 691 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 L1RE1Q9UN81 338 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 APOBEC2Q9Y235 224 aaKnown RBP4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 KCTD3Q9Y597 815 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 SPO11Q9Y5K1 396 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 EPN1Q9Y6I3 576 aaPredicted RBP4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 TET1Q8NFU7 2136 aa4.31□□□□□ -1.72
TMEM39A-204ENST00000468545 DBX1A6NMT0 343 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 H0YGN5 161 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 DVL2O14641 736 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 INPPL1O15357 1258 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 TRAPPC3O43617 180 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 BRINP1O60477 761 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 FKBP9O95302 570 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 IPO7O95373 1038 aaKnown RBP4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 GJB5O95377 273 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 CYP17A1P05093 508 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 OR4Q2P0C623 313 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 VDRP11473 427 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 CCDC130P13994 396 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 MYOGP15173 224 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 CYP11B1P15538 503 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 CHRNB2P17787 502 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 MSNP26038 577 aaKnown RBP4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 ADORA2BP29275 332 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 TKTP29401 623 aaKnown RBP4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 RAD23BP54727 409 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 NAP1L1P55209 391 aaKnown RBP4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 PSMC1P62191 440 aaKnown RBP4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 DSC1Q08554 894 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 SPA17Q15506 151 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 MDH1BQ5I0G3 518 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 KIAA1841Q6NSI8 718 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 DENND1BQ6P3S1 775 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 FUT10Q6P4F1 479 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 FAM43BQ6ZT52 329 aaPredicted RBP4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 TOGARAM2Q6ZUX3 1019 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 FKBP9P1Q75LS8 142 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 STRA8Q7Z7C7 330 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 KIAA1328Q86T90 577 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 C11orf74Q86VG3 221 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 VPS36Q86VN1 386 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 FAM71AQ8IYT1 594 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 CMTR2Q8IYT2 770 aaKnown RBP4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 C12orf29Q8N999 325 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 COLGALT1Q8NBJ5 622 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 SLC4A11Q8NBS3 891 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 CCDC112Q8NEF3 446 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 SLC30A5Q8TAD4 765 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 LNX1Q8TBB1 728 aaPredicted RBP4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 FNIP1Q8TF40 1166 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 ZNF606Q8WXB4 792 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 ASB15Q8WXK1 588 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 RSPH1Q8WYR4 309 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 TFAP2BQ92481 460 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 SHC3Q92529 594 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 SYN2Q92777 582 aaPredicted RBP4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 JAKMIP2Q96AA8 810 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 ZBTB8AQ96BR9 441 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 ZNF689Q96CS4 500 aaPredicted RBP4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 CYFIP2Q96F07 1278 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 PWWP2AQ96N64 755 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 ZNF558Q96NG5 402 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 NOX5Q96PH1 765 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 PCDHB18PQ96TA0 734 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 RAD9AQ99638 391 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 TMEM175Q9BSA9 504 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 DNAI2Q9GZS0 605 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 CERS4Q9HA82 394 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 GDAP2Q9NXN4 497 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 H2AFY2Q9P0M6 372 aaPredicted RBP4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 MYO1AQ9UBC5 1043 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 HMGXB4Q9UGU5 601 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 ADAM28Q9UKQ2 775 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 MTUS1Q9ULD2 1270 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 MYO6Q9UM54 1294 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 BARX2Q9UMQ3 279 aaPredicted RBP4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 TFR2Q9UP52 801 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 WASF3Q9UPY6 502 aa4.3□□□□□ -1.72
TMEM39A-204ENST00000468545 DAAM1Q9Y4D1 1078 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms