RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 TPI1P60174 286 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 ST8SIA6P61647 398 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 SLC25A11Q02978 314 aaKnown RBP11.96□□□□□ -0.49
CUX1-207ENST00000465461 GNA12Q03113 381 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 SLC12A1Q13621 1099 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 ACAP1Q15027 740 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 C6orf118Q5T5N4 469 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 ACBD5Q5T8D3 534 aaPredicted RBP11.96□□□□□ -0.49
CUX1-207ENST00000465461 PRR23BQ6ZRT6 265 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.96□□□□□ -0.49
CUX1-207ENST00000465461 SETD3Q86TU7 594 aaPredicted RBP11.96□□□□□ -0.49
CUX1-207ENST00000465461 TMTC1Q8IUR5 882 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 CCDC170Q8IYT3 715 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 FAM160A2Q8N612 972 aaPredicted RBP11.96□□□□□ -0.49
CUX1-207ENST00000465461 NIPA2Q8N8Q9 360 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 EPAS1Q99814 870 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 MKRN2Q9H000 416 aaKnown RBP11.96□□□□□ -0.49
CUX1-207ENST00000465461 IRF2BPLQ9H1B7 796 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 PRSS16Q9NQE7 514 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 KLHL11Q9NVR0 708 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 TMEM248Q9NWD8 314 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 CWC15Q9P013 229 aaKnown RBP11.96□□□□□ -0.49
CUX1-207ENST00000465461 EBF1Q9UH73 591 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 VPS51Q9UID3 782 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 MFHAS1Q9Y4C4 1052 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 PCDHGA2Q9Y5H1 932 aa11.96□□□□□ -0.49
CUX1-207ENST00000465461 MUC6Q6W4X9 2439 aa11.96□□□□□ -0.5
CUX1-207ENST00000465461 A0A0U1RQJ8 604 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 ILVBLA1L0T0 632 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 GOLGA6L3A6NEY3 463 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 EIF3CLB5ME19 914 aaKnown RBP11.95□□□□□ -0.5
CUX1-207ENST00000465461 CBX4O00257 560 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 BNIP3LO60238 219 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 SIN3BO75182 1162 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 ALDH1A2O94788 518 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 ASLP04424 464 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 SRPRAP08240 638 aaKnown RBP11.95□□□□□ -0.5
CUX1-207ENST00000465461 CD48P09326 243 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 BCKDHBP21953 392 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 NOP2P46087 812 aaKnown RBP11.95□□□□□ -0.5
CUX1-207ENST00000465461 COPAP53621 1224 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 OXCT1P55809 520 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 STARD3Q14849 445 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 SPA17Q15506 151 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 ACCSLQ4AC99 568 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 IL31Q6EBC2 164 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 KIAA1324Q6UXG2 1013 aaKnown RBP11.95□□□□□ -0.5
CUX1-207ENST00000465461 RTL3Q8N8U3 475 aaKnown RBP11.95□□□□□ -0.5
CUX1-207ENST00000465461 RFFLQ8WZ73 363 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 ARHGEF2Q92974 986 aaKnown RBP11.95□□□□□ -0.5
CUX1-207ENST00000465461 CELF6Q96J87 481 aaKnown RBP11.95□□□□□ -0.5
CUX1-207ENST00000465461 MRGPRX1Q96LB2 322 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 EIF3CQ99613 913 aaKnown RBP11.95□□□□□ -0.5
CUX1-207ENST00000465461 DESI2Q9BSY9 194 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 FAM126AQ9BYI3 521 aaPredicted RBP11.95□□□□□ -0.5
CUX1-207ENST00000465461 KLC2Q9H0B6 622 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 GOLPH3Q9H4A6 298 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 NOL6Q9H6R4 1146 aaKnown RBP11.95□□□□□ -0.5
CUX1-207ENST00000465461 ATP13A1Q9HD20 1204 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.95□□□□□ -0.5
CUX1-207ENST00000465461 SALL4Q9UJQ4 1053 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 ARIH1Q9Y4X5 557 aaPredicted RBP11.95□□□□□ -0.5
CUX1-207ENST00000465461 DUSP10Q9Y6W6 482 aa11.95□□□□□ -0.5
CUX1-207ENST00000465461 FANCMQ8IYD8 2048 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 NPC1O15118 1278 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 DAPK3O43293 454 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 SMAD6O43541 496 aaKnown RBP11.94□□□□□ -0.5
CUX1-207ENST00000465461 BUB1O43683 1085 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 RPP40O75818 363 aaKnown RBP11.94□□□□□ -0.5
CUX1-207ENST00000465461 ZMPSTE24O75844 475 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 TNNT1P13805 278 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 ERCC2P18074 760 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 AMPD1P23109 780 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 MAPKAPK2P49137 400 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 KRT83P78385 493 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 ARF5P84085 180 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 MMRN1Q13201 1228 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 CAMK2GQ13555 558 aaPredicted RBP11.94□□□□□ -0.5
CUX1-207ENST00000465461 SIM2Q14190 667 aaPredicted RBP11.94□□□□□ -0.5
CUX1-207ENST00000465461 DLG2Q15700 870 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 BOLA3Q53S33 107 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 C9orf64Q5T6V5 341 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 ZC3H14Q6PJT7 736 aaKnown RBP11.94□□□□□ -0.5
CUX1-207ENST00000465461 RFX8Q6ZV50 586 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 CEP68Q76N32 757 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 ASCL5Q7RTU5 278 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 KBTBD6Q86V97 674 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 ZNF354CQ86Y25 554 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 TMPRSS6Q8IU80 811 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 TP53INP2Q8IXH6 220 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 RHOT2Q8IXI1 618 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 STK40Q8N2I9 435 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 DEFB119Q8N690 84 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 ATP11CQ8NB49 1132 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 PTPRN2Q92932 1015 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 FAM122AQ96E09 287 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 CATSPERBQ9H7T0 1116 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 PRDM16Q9HAZ2 1276 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 PCDH18Q9HCL0 1135 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 ETNK2Q9NVF9 386 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms